PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G148800.1.p
Common NameSb10g020010, SORBIDRAFT_10g020010
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 351aa    MW: 37437.6 Da    PI: 7.7254
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G148800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.6e-28148206259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver+++d +++++ Y+geH h+
  Sobic.010G148800.1.p 148 ADPWAWRKYGQKPIKGSPYPRGYYRCSTDkDCRARKQVERCRTDASTLIVSYTGEHSHP 206
                           699***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-29139208IPR003657WRKY domain
SuperFamilySSF1182901.96E-25141208IPR003657WRKY domain
PROSITE profilePS5081130.756142208IPR003657WRKY domain
SMARTSM007741.2E-32147207IPR003657WRKY domain
PfamPF031061.2E-23149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEGDLRWCCG SSSNDWDLHA VVRLASCSGG SRSRVTSPSP WASDESFSCL PPPPQSQKDE  60
VTTDAAALQQ PLISPAVDDL CGLQQAFLAA TPQPRSEAPP PQPPAKPRTS YRNNDGGVGG  120
GPTRSKRKKK KSQVTSKEVT RVPVGTSADP WAWRKYGQKP IKGSPYPRGY YRCSTDKDCR  180
ARKQVERCRT DASTLIVSYT GEHSHPVPLH RNALAGTTRN KPQPAPSTSP AEQPPAASPI  240
VGVEYEEDDT VAASVLLEDA ETEGEEDVLS LFLELAPSPS NGSGSKDVMV STELHNGRGS  300
QKVVALSKLH EFRHPATTSS SRTSDGLGAA PAAMNVTHEN CPFSGLRLTT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-19132208179Disease resistance protein RRS1
5w3x_D4e-19132208179Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G148800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686091e-177BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438452.10.0WRKY transcription factor 22
TrEMBLC5Z3H50.0C5Z3H5_SORBI; Uncharacterized protein
STRINGSb10g020010.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-39WRKY family protein