PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G160900.1.p
Common NameSb10g021360, SORBIDRAFT_10g021360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 513aa    MW: 55130 Da    PI: 6.743
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G160900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31118171255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Sobic.010G160900.1.p 118 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171
                           8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-29114172IPR009057Homeodomain-like
PROSITE profilePS5129412.601114174IPR017930Myb domain
SuperFamilySSF466895.02E-14117172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-22118173IPR006447Myb domain, plants
PfamPF002498.8E-9119170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGEVKQKVAT EEDMLEEDDE KRSLDNSVPP LILDLNEGFG EGSEEGEAGD DGDGNEEDGD  60
DGGSTSEVEG GRSSSNNSSS TNHTSMSNKY CDMDSNSKGE GSGERALTVR QYNRSKLPRL  120
RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHESGG  180
HERAAISSVF SPMDFHMMRR GDHRFHDMLL HRAAGSVISS GRLLHNAVSP EASRLYALLQ  240
RRQQPSMQTF DFKNYSSNLR DQEWSFSQHA AAAAAVAARA GAINNHGPTK GLIHDMILRK  300
NGRPTSHLFD VRDAIASNRT SSDAAGAAAN HGGGRVVRST DWDGTSSGPP LSRTMSAAAS  360
TGVALGGSHH QSRGRVANLT SSSDPVVTSE ALGSRLQTLL EPRTTKRMKT PMEGNGGTPD  420
LQLSLSPNDD MGGDADKQVK KRKFLGIELS EQEVDDSGKT TLPLSLSLSL RGGEWSSEDA  480
GSLEVAARSS GKKKAALGRS TLDLTMSIKA LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436442KQVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G160900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432234e-31AC243223.1 Panicum virgatum clone PV_ABa006-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304606.10.0uncharacterized protein LOC8072684
TrEMBLA0A194YJL00.0A0A194YJL0_SORBI; Uncharacterized protein
STRINGSb10g021360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.15e-34G2-like family protein