PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G162300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20371.2 Da    PI: 10.423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G162300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.8e-151557244
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                          rie+  + +vtfskR+ g+ KKA+EL  LC+  va+++fs+  
  Sobic.010G162300.1.p 15 RIEDAGRLEVTFSKRKSGLQKKASELFLLCGSPVALVVFSPGK 57
                          89**************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-21665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.427666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-21782IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-15828IPR002100Transcription factor, MADS-box
PfamPF003193.3E-171560IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-154364IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.10.106.5E-570171IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRPSKGRQR IEIRRIEDAG RLEVTFSKRK SGLQKKASEL FLLCGSPVAL VVFSPGKKAF  60
ALGTPSVDDV LRRHAPVPGE ELDAKILADT DDASAVADRA EAEAIVRRTE DTRARSATEK  120
ARMDAIGKSV RQAAAKAGRK FWWEADSDEL GEDELPEFVK VLRRLRVNLQ RHLDSLSAPA  180
RQLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G162300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417421e-154BT041742.2 Zea mays full-length cDNA clone ZM_BFb0042I18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438537.21e-126agamous-like MADS-box protein AGL62
TrEMBLA0A194YJL51e-127A0A194YJL5_SORBI; Uncharacterized protein
STRINGSb10g021663.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-28AGAMOUS-like 62