PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G168500.1.p

Common Name

Sb10g022130, SORBIDRAFT_10g022130

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 474aa MW: 51697 Da PI: 6.9636

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G168500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.1	2.2e-33	67	226	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 lp+G++F+Ptd+el+ e+L++kv++ + ++++ i+ +i++++P++Lp ++++ ++ +fF++ +k+y+tg+rk+r+ Sobic.010G168500.1.p 67 LPAGVKFDPTDQELI-EHLQAKVRAASaaapshplIDEFIPtIEGEdGICYTHPERLP-GLTKDGRSRHFFHRPSKAYTTGTRKRRKiq 153 799**********.99**999777775553333333776646******.556678999***************88 PP NAM 78 .....................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ g++ g+kk+Lv+y g+++k+ kt+Wvmh+y+l Sobic.010G168500.1.p 154 praaesssssalpaqqqqqqqRSETRWHKTGKTRPVVV-AGQQRGCKKILVLYtnFGKHRKPDKTNWVMHQYHL 226 **************9998755789********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-35	60	245	IPR003441	NAC domain
PROSITE profile	PS51005	29.643	67	245	IPR003441	NAC domain
Pfam	PF02365	1.2E-15	68	226	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MGSWQQGELQ GAAMDGAAAA AAATGSGGGG HRRMDSRIEE HGKYLSESSC CSQCGHKTER 60 KLDWVGLPAG VKFDPTDQEL IEHLQAKVRA ASAAAPSHPL IDEFIPTIEG EDGICYTHPE 120 RLPGLTKDGR SRHFFHRPSK AYTTGTRKRR KIQPRAAESS SSSALPAQQQ QQQQRSETRW 180 HKTGKTRPVV VAGQQRGCKK ILVLYTNFGK HRKPDKTNWV MHQYHLGDKE EEREGELVVS 240 KIFYQTQPRQ CGVAAEPAVA AAASSDTVEE AAADPPLPPD GMVVPPPDVA GAFHGAAGID 300 EFNFAQFRSS FEEVDVGASS VQISVRDDEE VHAGHPNLHQ EHNLHQHQFG NQEQRQRMAA 360 AAAAFHINTP TEPITTMITS STVVHHGSAV LQHPDAYGHG TTYRRHQQDD EQLHQQPQSF 420 DGRSTAGLEA VIMGCTSSRR SKRGEASGSG GNKESTGWPY QSFWPSDSQD HHG*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MGSWQQGELQ GAAMDGAAAA AAATGSGGGG HRRMDSRIEE HGKYLSESSC CSQCGHKTER  60
KLDWVGLPAG VKFDPTDQEL IEHLQAKVRA ASAAAPSHPL IDEFIPTIEG EDGICYTHPE  120
RLPGLTKDGR SRHFFHRPSK AYTTGTRKRR KIQPRAAESS SSSALPAQQQ QQQQRSETRW  180
HKTGKTRPVV VAGQQRGCKK ILVLYTNFGK HRKPDKTNWV MHQYHLGDKE EEREGELVVS  240
KIFYQTQPRQ CGVAAEPAVA AAASSDTVEE AAADPPLPPD GMVVPPPDVA GAFHGAAGID  300
EFNFAQFRSS FEEVDVGASS VQISVRDDEE VHAGHPNLHQ EHNLHQHQFG NQEQRQRMAA  360
AAAAFHINTP TEPITTMITS STVVHHGSAV LQHPDAYGHG TTYRRHQQDD EQLHQQPQSF  420
DGRSTAGLEA VIMGCTSSRR SKRGEASGSG GNKESTGWPY QSFWPSDSQD HHG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G168500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969775	0.0	EU969775.1 Zea mays clone 335447 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304611.1	0.0	uncharacterized protein LOC8061978
Swissprot	Q9M0F8	1e-124	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A194YJR3	0.0	A0A194YJR3_SORBI; Uncharacterized protein
STRING	Sb10g022130.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-101	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Sobic.010G168500.1.p
Entrez Gene	8061978

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]