PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G169200.1.p
Common NameSb10g022210, SORBIDRAFT_10g022210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 495aa    MW: 52608 Da    PI: 7.1032
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G169200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.6e-094334711854
                           HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  Sobic.010G169200.1.p 433 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 471
                           57766689*****************************88 PP
2BELL19.81.9e-07298366472
                  BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            ++k k+ L +ll+ +d+r kq+++++q  +  +   +  g  ++ + +A  a+S  +r L+ +i++ i
  Sobic.010G169200.1.p 298 HNHKLKNDLQKLLQIMDQRCKQCMDEIQSAACKYGSLVRPGGGALSAPFAHGAVSAMHRRLRARITGEI 366
                           45667899*********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.4E-16235363IPR006563POX domain
PROSITE profilePS5007111.953412475IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-26414488IPR009057Homeodomain-like
CDDcd000866.42E-12415476No hitNo description
SuperFamilySSF466894.71E-16415484IPR009057Homeodomain-like
SMARTSM003891.6E-7415479IPR001356Homeobox domain
PfamPF059206.5E-16432471IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MTGSNASYQQ QLGLGVGVGV DAMTRNCFVS GDGSDIISAD AAPLFHVPEY TPSSGFGFVG  60
EPAAADIAAS SFPADGSVLL AGHQLLRATA LQSVSPEETT HAGGAYGVTG GGSYSYSYVP  120
SPWDVTVAHA PRMAKQLSIA GEPAEGGWIH ESSYYCPTTW FSGHAQFAGA PASELSLRLR  180
AGSSPTAGAV SASLPDQSSE VSCSGPGLFQ PPCGAGGQVV RQVPMHFSQV LSRWSGYANI  240
AQQALDEFVG CLLQDVAGFA GFTTGGGEAS CPLPSSSCSK TTSSSDPNPS MFLGSEEHNH  300
KLKNDLQKLL QIMDQRCKQC MDEIQSAACK YGSLVRPGGG ALSAPFAHGA VSAMHRRLRA  360
RITGEIAAAT RRGDQPSSSS SLSLTLADRE RSWESAFIQK HWALRQLRRG DQQSWRPQRG  420
LPEKSVAVLK AWMFENFLRP YPKDNEKEML AARSGLSRSQ VSNWFINARV RLWKPMIEEM  480
YEDLKKASGG MEGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G169200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9709580.0EU970958.1 Zea mays clone 354689 BEL1-related homeotic protein 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304520.10.0homeobox protein ATH1 isoform X2
RefseqXP_021304521.10.0homeobox protein ATH1 isoform X2
RefseqXP_021304522.10.0homeobox protein ATH1 isoform X2
RefseqXP_021304523.10.0homeobox protein ATH1 isoform X2
TrEMBLA0A194YJS10.0A0A194YJS1_SORBI; Uncharacterized protein
STRINGSb10g022210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.17e-51homeobox gene 1