PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G170600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 418aa    MW: 44899.8 Da    PI: 4.5061
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G170600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.31.3e-29921822101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k++e++ed++++ +isw +  nsfvv+d++ f+   Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h +F +g+
  Sobic.010G170600.1.p  92 FLAKTFELVEDPATDGVISWGAARNSFVVWDPHAFSAGHLPRRFKHGNFSTFLRQLNTYGFRKVSPDR---------WEFAHAEFLAGQ 171
                           9********************999******************************************99.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           + ll +i+r++
  Sobic.010G170600.1.p 172 RPLLVNIQRRR 182
                           *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-3087181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-4988181IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.8E-3289181IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-2692181IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-1592115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-15130142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-15143155IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSSAKTPTEP THQPTTQRDE LIAAPAARPP RLRRMERPAV TVKQEEDDDD VVVVLDADGD  60
AAGGHWPGAA GAAPAPAPEP WQTPAGSAVP PFLAKTFELV EDPATDGVIS WGAARNSFVV  120
WDPHAFSAGH LPRRFKHGNF STFLRQLNTY GFRKVSPDRW EFAHAEFLAG QRPLLVNIQR  180
RRPGSTASTP SSAGAGGGGD RDNSELKRLR RDREALAREL TRLRREQEEA RAQLLDMERR  240
VRGTERRQEQ CTASLARAVR SPAFLDGLLA RRGQGGRGGA HVEAAGRKRR LLDAAAAATA  300
PDAADVLAFE ELALAAGAEV EAAAQISDAG NATDMMWYEL LGEEQVEIDA EVDELVAAAA  360
ATEAAAEPWA EMDEKEVEEL VAAAATAATE AEPWAEMDDE EVEELVQQID CIGSTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-238718115120Heat shock factor protein 1
5hdg_A6e-23891817110Heat shock factor protein 1
5hdn_A6e-23891817110Heat shock factor protein 1
5hdn_B6e-23891817110Heat shock factor protein 1
5hdn_C6e-23891817110Heat shock factor protein 1
5hdn_D6e-23891817110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G170600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9654391e-116EU965439.1 Zea mays clone 286056 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437171.20.0putative heat stress transcription factor A-6a
SwissprotQ5Z6A46e-94HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A194YKT80.0A0A194YKT8_SORBI; Uncharacterized protein
STRINGSb10g022340.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP1403244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.15e-43heat shock transcription factor A7A