PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G172800.1.p
Common NameSb10g022530, SORBIDRAFT_10g022530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 556aa    MW: 59284.2 Da    PI: 7.0892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G172800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12368409854
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ErrRR+r+N++f++Lr llP+      +K +Ka++L  ++eY+++L
  Sobic.010G172800.1.p 368 SERRRRERLNESFQTLRALLPPG-----TKKDKATVLANTTEYMNKL 409
                           7********************97.....8**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16362431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15364427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-12366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9368409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-5375409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTSAAASKDE RDTRAVLLMD AIFSLAAGPR ARVLERAAAR IPGCLYICLW APMIAAGLPP  60
SSHLLCVDAW ITNGGGGDRT RAAFDEYRRS FCAVVSGCVP GWAYKDRRPY MELSEPDLTS  120
SASLPEQLQF YHEAGTKMAV FMGCDNGEIE VGLSSTSAPP AVASHVQQSL LEELMQAAPT  180
VPSSSSSSMP SVSIGSPEYS SFIRSMATSA AAATSAAEPS SSQQLQQHPV GPPLPGPGLP  240
APPPVYGPHG QASFLDPDNE VAAIMTQAIL AVISSSAPPP PASIAVPWRG AFRAYNAALS  300
PRARPKPGAP GQRMIKTAIA LMVKVQMAMR RRELAEARQH EDATAAAAQP PPPTQQKHTS  360
SQLHHMFSER RRRERLNESF QTLRALLPPG TKKDKATVLA NTTEYMNKLI AEVSELEERN  420
RRLEAQLGLL LPGGDTRQTP SDDDPSERVA VDVTTGASTS SSSSRQPHQE VSIRVTVRTE  480
CDLSEVVVAM IARIKEMGRF TVVTVDARQR SSAHVQVGII LRATGGNDEL DETSLKEAVA  540
KAVEDAVARP PSPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G172800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304826.10.0putative transcription factor bHLH041
TrEMBLC5Z5260.0C5Z526_SORBI; Uncharacterized protein
STRINGSb10g022530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-21bHLH family protein