PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G189500.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 469aa    MW: 49662.4 Da    PI: 7.5232
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G189500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.72.8e-94844682374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++l+l+cA+ ++ gdl++a+++   l   asp++d+  Rla +f++ALa r       ++ a ++ +     s+ + +a+ +f+++ P+
  Sobic.010G189500.3.p  84 RDLVLACADLLQRGDLQAARRAAGVLLSAASPRADAADRLAYHFARALALRADVRAAAVA-AGRVVAPGLVASAATSSAYLAFNQIAPF 171
                           6899***********************************************987444444.455555555679999999999******* PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           l+f+hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++++l +tg+rL+ fA+++++pf
  Sobic.010G189500.3.p 172 LRFAHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARSIQLPF 256
                           *********************************************988888***********....9********************** PP

                  GRAS 177 efnvl.................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                           +f++l                 +++++++   ++L+++p+E+laVn+v+ lh+l       ++e  ++Lk vk + P vv+v+e+e+  
  Sobic.010G189500.3.p 257 HFTPLllscaathhhqhvasgsTTTTTNSSAASSLELHPDETLAVNCVMFLHKLG-----GQDELAAFLKWVKAMAPAVVTVAERETIG 340
                           *****99999999988876665555666668999********************8.....2233577*******************655 PP

                  GRAS 249 nse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                           ++     ++ +r + a+++ysa+f++lea++p+ s+er  vE+e+lgrei  ++ ++g +     + le+W ++ ++aGF + pls +a
  Sobic.010G189500.3.p 341 GGFdridDLPQRAAVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIDAALDASGGR---WWRGLERWGAAARAAGFAARPLSAFA 426
                           44334449**********************************************999987...7899********************** PP

                  GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           ++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W+
  Sobic.010G189500.3.p 427 VSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 468
                           *****************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.89857447IPR005202Transcription factor GRAS
PfamPF035149.6E-9284468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSLLVGNDGV QVEVMIVCLI WGLRHSIQED FKKLGLGGTT TVVQAMLSSL HHHHSSSSSD  60
TDTNNGNNKN GSSGVLAAAV PSARDLVLAC ADLLQRGDLQ AARRAAGVLL SAASPRADAA  120
DRLAYHFARA LALRADVRAA AVAAGRVVAP GLVASAATSS AYLAFNQIAP FLRFAHLTAN  180
QAILDAVEGA RRIHILDLDA AHGVQWPPLL QAIAERADPA AGPPEVRITG AGADRDTLLR  240
TGSRLRAFAR SIQLPFHFTP LLLSCAATHH HQHVASGSTT TTTNSSAASS LELHPDETLA  300
VNCVMFLHKL GGQDELAAFL KWVKAMAPAV VTVAERETIG GGFDRIDDLP QRAAVAMDHY  360
SAVFEALEAT VPPGSRERLA VEQEVLGREI DAALDASGGR WWRGLERWGA AARAAGFAAR  420
PLSAFAVSQA RLLLRLHYPS EGYLVQEARG ACFLGWQTRP LLSVSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-469046725377Protein SCARECROW
5b3h_D2e-469046725377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G189500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9516750.0JQ951675.1 Sorghum bicolor Monoculm1A (moc1A) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437271.20.0LOW QUALITY PROTEIN: protein MONOCULM 1
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A1W0VTV70.0A0A1W0VTV7_SORBI; Uncharacterized protein
STRINGSb10g023950.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.14e-71GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]