PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G191100.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 411aa MW: 43133.3 Da PI: 8.8859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G191100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.6e-09	183	230	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq Sobic.010G191100.2.p 183 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 230 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-15	177	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.54E-10	177	234	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-14	179	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	183	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MRHASPPQEL PAAAAGGEIQ AALSPATASS SAARARGGGG GGGGSFTALL GLPTSQAMEL 60 LLPRTAPPPA LAPSPAPAAA APAPTFPSDP HLVDRAARFS TFAPPSPSPS SPSPAPPPPP 120 PPAAANAGKR KAEPVDRASK GKAAKKGKTA AAEEKPTGGD GDGDDEKPAY VHVRARRGQA 180 TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL 240 AAVNPRVDFG GLDSFLTTEC GRIAGFNCKN GIDLEQVTWP EMGVHGTRQL MQLQQHFWHG 300 DLAHPHQVAS QWEKRGDGHP PVFGNPSPSL FGYDLTSSGL EHRSSFCCTN ERNQRKGVIR 360 AGDLPFGSGQ PICATALDPS RVRCGDRSYW RNATNPGEQA KDRALSDDGR *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MRHASPPQEL PAAAAGGEIQ AALSPATASS SAARARGGGG GGGGSFTALL GLPTSQAMEL  60
LLPRTAPPPA LAPSPAPAAA APAPTFPSDP HLVDRAARFS TFAPPSPSPS SPSPAPPPPP  120
PPAAANAGKR KAEPVDRASK GKAAKKGKTA AAEEKPTGGD GDGDDEKPAY VHVRARRGQA  180
TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL  240
AAVNPRVDFG GLDSFLTTEC GRIAGFNCKN GIDLEQVTWP EMGVHGTRQL MQLQQHFWHG  300
DLAHPHQVAS QWEKRGDGHP PVFGNPSPSL FGYDLTSSGL EHRSSFCCTN ERNQRKGVIR  360
AGDLPFGSGQ PICATALDPS RVRCGDRSYW RNATNPGEQA KDRALSDDGR *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G191100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	0.0	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304408.1	0.0	transcription factor bHLH48 isoform X1
Swissprot	Q8VZ02	1e-64	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1W0VTV1	0.0	A0A1W0VTV1_SORBI; Uncharacterized protein
STRING	GRMZM2G378653_P02	1e-174	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.010G191100.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]