PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G191900.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 559aa    MW: 59790.5 Da    PI: 7.6271
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G191900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-2765118155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W  eLH++Fveav+q+ G ++A+Pk+ile+m+v+gLt ++v+SHLQkYR+
  Sobic.010G191900.2.p  65 KQRVQWCGELHRKFVEAVNQI-GMDRAVPKKILEVMNVEGLTKQNVASHLQKYRI 118
                           79*******************.********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.17662121IPR017930Myb domain
SuperFamilySSF466891.43E-1862122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2763122IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-2465118IPR006447Myb domain, plants
PfamPF002491.8E-568117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MVKPVRLEQL RGIWTHVVKN RKFPSGDGDN VEKVGANHAK KYSRKNKKAV DVADEDNEST  60
STQKKQRVQW CGELHRKFVE AVNQIGMDRA VPKKILEVMN VEGLTKQNVA SHLQKYRIFL  120
RKLREGTLKN SNPFADETEA LRRNMSLPSF IGSPSSSNHC AKMNSSSAIG TQASLHTGSV  180
QVMSSQKNLG IPQSNMEPVG HCVNLPKDGV PMAVQDISRF ISSGKSYAPV SSGWLPGASQ  240
CFPSGPSGSS FANSSNGVVL NASKPFFVDI SGGSFANISN DSPPLTSNMS FSLSRSCSSY  300
ASILPGKILG SSRGIPFEDI SDGEILAPPG HLPLQSPDLV NQPSIQFQSC SAGKFNQVAS  360
EAHQIAGPSN SSKAAVPSRF SDLGHNVGTS EDPSQGNIFK INQLSRFAGS SGQISTFRNE  420
YKRKIAGIMG NTVPMVGFRE QVATSSFGNN THSTAMPIGN SALASSSSTR PDLQIDNNSA  480
MPTQVLNGDG ASDNLHVGST IQQAVSDQVN NINEFVVGTS EAQNEESDDW DDLLAYFNQQ  540
DFINNGGPFI DGDWGSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-2061123163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G191900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305574.10.0two-component response regulator ORR25
TrEMBLA0A194YL880.0A0A194YL88_SORBI; Uncharacterized protein
STRINGSb10g024180.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-32response regulator 2