PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G192432.2.p
Common NameSb10g024190, SORBIDRAFT_10g024190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 284aa    MW: 30413.6 Da    PI: 10.3017
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G192432.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.1e-13120162544
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 
                           k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e+++
  Sobic.010G192432.2.p 120 KTLRRLAQNREAARKSRLRKKAYIQQLESgriRLAQLEQEMQM 162
                           7789***********************9555599999999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.1E-5116169IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-9116162No hitNo description
PROSITE profilePS502178.714118161IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-8120155No hitNo description
PfamPF001709.4E-11120163IPR004827Basic-leucine zipper domain
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
PfamPF141442.8E-25199271IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSSDLDQALL LYFDGQQAKT SIQEQQPQTL NIFPSQPMHH IEPSPKGSMA SSSVVAAQVA  60
AAPSKNSQAP SLMGGGGPLA AAGKSSKAAI KREGGTAGGK HGAVGASSSD QEGPRTPDPK  120
TLRRLAQNRE AARKSRLRKK AYIQQLESGR IRLAQLEQEM QMARTHQGAL WGAGTLSPDA  180
ALFNLEYERW LGEHSKVVAR LRAAAEEHHR PDGELRAYVD EAAAHYGALM GHKARVAGAD  240
PLHLLSGLWK GAAERCFLWI GGFRPSELVK VPTSTTLKFI ICR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.117660.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G192432.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550420.0BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBankKJ7276040.0KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438679.10.0transcription factor TGAL8 isoform X1
RefseqXP_021304565.10.0transcription factor TGAL8 isoform X2
SwissprotQ69T211e-107TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLA0A1W0VTU60.0A0A1W0VTU6_SORBI; Uncharacterized protein
TrEMBLA0A1W0VTU90.0A0A1W0VTU9_SORBI; Uncharacterized protein
STRINGSb10g024190.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.39e-59bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]