PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G193800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 238aa    MW: 24490.9 Da    PI: 9.6719
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G193800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.5e-073257227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          kt+ C+ +     Ck G++C+FaHg+
  Sobic.010G193800.2.p 32 KTRMCNKYNTAEGCKWGSKCHFAHGE 57
                          89**********************96 PP
2zf-CCCH375.7e-12203228127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC +f + G C +GdrC+FaHg+
  Sobic.010G193800.2.p 203 FKTKLCENFNK-GSCTFGDRCHFAHGE 228
                           69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-142662IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-83061IPR000571Zinc finger, CCCH-type
SMARTSM003561.43057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5583058IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.89E-15101172IPR004088K Homology domain, type 1
SMARTSM003227.8E-11102172IPR004087K Homology domain
PROSITE profilePS5008415.2103167IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.4E-16103171IPR004088K Homology domain, type 1
CDDcd001051.40E-14105167No hitNo description
PfamPF000131.1E-11105168IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.6E-17200234IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7202228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9202233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131202229IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9203228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTNLGGPPVP APPGRMPMGP GGPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGEREL  60
GKPLQMDNSM GAPPPMGPGP NGHFMPPPMP HLDMVPPSTF GASATAKISV DASLAGAIIG  120
KGGANTKHIS RVTGAKLAIR DNEADPNHKN IELEGTFDQI KHASAMVTEL IVRISGKAPG  180
PQAKNNPGGR GPGSHAGGPG SNFKTKLCEN FNKGSCTFGD RCHFAHGESE LRKPAAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.14460.0callus| leaf| pollen| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G193800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305248.11e-171zinc finger CCCH domain-containing protein 44-like isoform X1
RefseqXP_021305249.11e-172zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ69XQ31e-127C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A194YK931e-170A0A194YK93_SORBI; Uncharacterized protein
TrEMBLA0A194YL981e-170A0A194YL98_SORBI; Uncharacterized protein
STRINGSb10g024330.11e-171(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-52C3H family protein