PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G194400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 111aa    MW: 12320.9 Da    PI: 7.6308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G194400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000183355123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y C+ C+k+F+++     H++ H
  Sobic.010G194400.2.p 33 YICSFCNKTFKSPQARGGHQNAH 55
                          89**********98776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-53058No hitNo description
Gene3DG3DSA:3.30.160.609.7E-43058IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.0583358IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MAHKDNPRDI YPHGLASLGA VVEPKPQSVE TLYICSFCNK TFKSPQARGG HQNAHKKEIV  60
VLRRNLEEEM SNKRAKQAHN VFVASQEIKQ LPLGSDSFDV FTNLDVDSES *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G194400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0VTX25e-77A0A1W0VTX2_SORBI; Uncharacterized protein
STRINGPavir.Da00436.1.p2e-30(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2103446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.13e-09zinc finger protein 3