PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G199000.1.p

Common Name

Sb10g024770, SORBIDRAFT_10g024770

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 199aa MW: 20394.4 Da PI: 8.499

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G199000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28	4.6e-09	92	143	3	54
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + +++rr ++NRe+Arr R+R++ +++eL +v++L a N +L+ el++ Sobic.010G199000.1.p 92 DERKARRQASNRESARRARARRRGQLDELSSRVAALRAANARLAVELNRVAA 143 66899******************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-4	90	154	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-7	90	140	No hit	No description
PROSITE profile	PS50217	10.611	92	141	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-6	93	142	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.38E-6	94	140	No hit	No description
PROSITE pattern	PS00036	0	97	112	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MQRDDIATLV CQCHTLGAAA AAADFASFYM LQHGHGSLAH EPSYSYPPGT ADGSWCAYGG 60 AGHGTGASAG AGASMGGAGE QLEQQQAGAA RDERKARRQA SNRESARRAR ARRRGQLDEL 120 SSRVAALRAA NARLAVELNR VAAARAREAR ENARLSAEAG ALRERLAAAE AAAAVAAGAR 180 DAAEKGDEEA ATPAAELR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G199000.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437319.2	1e-133	transcription factor RF2b
TrEMBL	A0A194YKE5	1e-131	A0A194YKE5_SORBI; Uncharacterized protein
STRING	Sb10g024770.1	2e-75	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17736	8	11
Representative plant	OGRP20023	2	2

Link Out ? help Back to Top
Phytozome	Sobic.010G199000.1.p
Entrez Gene	8067679