PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G200200.1.p
Common NameSb10g024870, SORBIDRAFT_10g024870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 215aa    MW: 22427.3 Da    PI: 10.9177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G200200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.71.9e-103583154
                   AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
                          ++y+GV ++     +vAeI+d         + ++lg++ t+eeAa a++aa++  +
  Sobic.010G200200.1.p 35 PRYRGVMRR--GDMYVAEIMDaA-----GlRPVWLGSYATPEEAAYAYDAAARIVH 83
                          6899**543..457*******33.....38*********************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.8542292IPR001471AP2/ERF domain
PfamPF008473.4E-53579IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-173693IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-133692IPR016177DNA-binding domain
SMARTSM003801.6E-143698IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQGGVIELAW QAAAAASWAE RGTRGVASRR LPVRPRYRGV MRRGDMYVAE IMDAAGLRPV  60
WLGSYATPEE AAYAYDAAAR IVHGDKAKPN FPEPPVTAQV AGGGGGGVPA AHAGVLPPLA  120
GHARVRAPLN GQQPAPPQAF YVQQAAAAST QHRKLPVSQA SVSDQAVVGD NFTDDGASSS  180
APARVLQCHG SPAPSRSAWS RRPGCGAVRR QKPRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G200200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437322.21e-117ethylene-responsive transcription factor 12
TrEMBLA0A1W0VTX71e-150A0A1W0VTX7_SORBI; Uncharacterized protein (Fragment)
STRINGSb10g024870.11e-150(Sorghum bicolor)