PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G202700.2.p
Common NameSb10g025053, SORBIDRAFT_10g025053
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 473aa    MW: 51522.4 Da    PI: 8.271
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G202700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.5e-13114171155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d+   +     +r    lg f+ta+ Aa+a+++a+ k++g
  Sobic.010G202700.2.p 114 SQYRGVTFYRRTGRWESHIWDCG--KqvylgVRIALFLGGFDTAQAAARAYDQAAIKFRG 171
                           78*******************53..133444778888999*****************997 PP
2AP242.81.3e-13214264155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Sobic.010G202700.2.p 214 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTETEAAQAYDKAAIKCYG 264
                           789*******.7******77733....25**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-6114171IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-12114180IPR016177DNA-binding domain
SMARTSM003803.3E-26115185IPR001471AP2/ERF domain
PROSITE profilePS5103216.674115179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15115179IPR001471AP2/ERF domain
PfamPF008473.6E-9214264IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17214273IPR016177DNA-binding domain
CDDcd000181.90E-24214274No hitNo description
SMARTSM003805.2E-34215278IPR001471AP2/ERF domain
PROSITE profilePS5103215.791215272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17215272IPR001471AP2/ERF domain
PRINTSPR003674.0E-6216227IPR001471AP2/ERF domain
PRINTSPR003674.0E-6254274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAATRRAFFH YCGVDGIARA APGEAELLPQ VGGRRPEEGA SSSMIFGFPM PVVPGRPAAA  60
VTQQFFPATA AAAPAQQQAT TEEQCHVPAG FSAAEQWVRS ASRKSRRGPR SRSSQYRGVT  120
FYRRTGRWES HIWDCGKQVY LGVRIALFLG GFDTAQAAAR AYDQAAIKFR GVNADINFAL  180
DDYKDEMKKM KSFSKEEFVQ VLRRQGAGFV RGSSRFRGVT QHKCGKWEAR IGQLMGKKYV  240
YLGLYDTETE AAQAYDKAAI KCYGKEAVTN FDAQGYDNEL QLQLQSWDDG ELDLELSLSC  300
SGSDPPSTVA VDASFSSAPG SKQRTMALTL DLPAAEETSA SYPHRSILTR PPPPTAAGMF  360
WRPADDHVHV QHHPHPGIGS RDDDNDTQLR MQLQMHLGDE QQEQMGSGGG GPRARWSNPS  420
GNGINWAPPY AYGASARPGN DDDEDASMQR RAAAASSGFP LRQLGAACRP SR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.52571e-44embryo| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G202700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659046.11e-174glossy15 isoform X1
SwissprotA0A0N7KMH01e-131AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A1W0VU140.0A0A1W0VU14_SORBI; Uncharacterized protein
STRINGSb10g025053.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-70AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]