PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G208300.1.p
Common NameSb10g025500, SORBIDRAFT_10g025500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 546aa    MW: 59511.7 Da    PI: 7.071
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G208300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.42.4e-2696149155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++Wt +LH++F+ea++++ G +kA+Pk+ile+m+v+g+t e+v+SHLQk+R+
  Sobic.010G208300.1.p  96 KQRVEWTRQLHSKFLEAINHI-GMDKAVPKKILEVMNVDGITKENVASHLQKFRM 149
                           79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011012.502133IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.2E-6249No hitNo description
PROSITE profilePS512949.60293155IPR017930Myb domain
SuperFamilySSF466891.08E-1893153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2694153IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-2596149IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
METMAKAIQH GACHYMVKPV RPEMVKNIWL HVVRKGKSNL RNKVNTRNDK PSQIVQPVDD  60
ENGEKDDAKY TRKHCKKNRK DGDGAEKDEV ISTQKKQRVE WTRQLHSKFL EAINHIGMDK  120
AVPKKILEVM NVDGITKENV ASHLQKFRMY LKKQKEGTLK YSAFVDEQQA WLNGKTHVNS  180
NMSVPECSST QISNEHPPLG TSMSFPSSCS GISYASKLRA SILGSNKGIP FDPDSFFEEM  240
AGGELLQSPE LANHPLAQIQ SLSTDQVAPS SHLPLQSPEL VNQPSTQIWS SSIGMLNQVA  300
REPPQFTSRN SSNYWTTSVS SSFHDGQNVG MSIGPSQRNN IFMNQLPGLV ASSHSVPSSR  360
NEYQNQMAGV MGTTPMVSFN EKATLAPFNF GSNGSSTVMP VNNFVPGSSL STRPSLSNLK  420
ICNSLILTQM PNGGGTTGNL PEGGTVGHQT VGDQENNKIQ LPMSTREVQI DMPVQMLNGG  480
ASGNLPKGSN TDLHPAGDQV NSTNELPTAG TSEAQNGAID NIDAFLADWV KQDLLNDDDA  540
FFNGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-2292153162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G208300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305586.10.0two-component response regulator ORR24
TrEMBLC5Z6S80.0C5Z6S8_SORBI; Uncharacterized protein
STRINGSb10g025500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4162723
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-34response regulator 2