PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G221500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 26767.9 Da    PI: 4.718
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G221500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.3e-26959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk  rqvtfskRr+g+lKKAeEL vLCd++v vi fs++gkl++yss
  Sobic.010G221500.1.p  9 KRIENKVSRQVTFSKRRKGLLKKAEELAVLCDVDVGVIGFSERGKLFDYSS 59
                          79***********************************************96 PP
2K-box56.99.3e-2087167988
                 K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            ++++++++  +++kL+ e+++L+ +++ + GedL+sL s+ eL +LeqqLe+++ k+R++K+el+++ +eelq k +e+ 
  Sobic.010G221500.1.p  87 DHQEQQQQMAAKISKLQHEYQQLEASLKTYTGEDLSSLtSVAELGELEQQLESAVGKVRARKDELFINLTEELQVKINENG 167
                           56788999******************************5689*********************************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.067161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-29288IPR002100Transcription factor, MADS-box
CDDcd002652.73E-40271No hitNo description
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-1787165IPR002487Transcription factor, K-box
PROSITE profilePS5129712.05592185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKVEMKR IENKVSRQVT FSKRRKGLLK KAEELAVLCD VDVGVIGFSE RGKLFDYSSP  60
ASLDDLIHRY EAATNTQLYH QELHYTDHQE QQQQMAAKIS KLQHEYQQLE ASLKTYTGED  120
LSSLTSVAEL GELEQQLESA VGKVRARKDE LFINLTEELQ VKINENGRHD DDAAATAGVE  180
AEETTMAEPL LPLPQSPSFA YLLAVEEKSA ASTMLRLWPP TDEDADDGGS SSRRGLQLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16178184MEF2 CHIMERA
6byy_B2e-16178184MEF2 CHIMERA
6byy_C2e-16178184MEF2 CHIMERA
6byy_D2e-16178184MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G221500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681773e-45BT068177.1 Zea mays full-length cDNA clone ZM_BFb0074C22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306116.11e-177MADS-box transcription factor 30
SwissprotQ655V43e-50MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A194YKS71e-175A0A194YKS7_SORBI; Uncharacterized protein
STRINGSb10g026690.11e-161(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.15e-40MIKC_MADS family protein