PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G224200.1.p
Common NameSb10g026930, SORBIDRAFT_10g026930
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 257aa    MW: 28218.5 Da    PI: 8.4872
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G224200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41e-301871255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+
  Sobic.010G224200.1.p 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-291473IPR009057Homeodomain-like
PROSITE profilePS5129413.5521474IPR017930Myb domain
SuperFamilySSF466891.2E-161872IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-241871IPR006447Myb domain, plants
PfamPF002496.8E-91970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS  60
HIKSHLQMYR SSSSSSSSST HQSSLQKLTS STAASNSKRV FLSREDHCAY ASQDGNTPAP  120
SDKNIYTTML RGCSHSSPYQ IPPSLEEVFR SCWEQRRGRA PWNSNVLTTE KAIRPGHTNN  180
KKPAEKQHTG CDLTLSIGLW EDASSDDADG SSSISEELLL PAPAAGARRV AAAVKEEESK  240
PAALNLDLTI SSSWLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.207990.0leaf| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G224200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560371e-146EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437427.10.0probable transcription factor KAN4
TrEMBLA0A1W0VU880.0A0A1W0VU88_SORBI; Uncharacterized protein
STRINGSb10g026930.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-25G2-like family protein