PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G247500.1.p
Common NameSb10g028630, SORBIDRAFT_10g028630
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 237aa    MW: 25488.7 Da    PI: 9.747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G247500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1898152256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tkeq + Le+ F+ ++ +s+++++eLA++++L++rqV vWFqNrRa+ k
  Sobic.010G247500.1.p  98 RKKLRLTKEQSTLLEDTFRAHNILSHAQKQELARQVNLSTRQVEVWFQNRRARTK 152
                           788899***********************************************98 PP
2HD-ZIP_I/II111.94.3e-3698186189
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+keq++lLE++F++++ L++ +K+elar+++l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL+ e ++L++
  Sobic.010G247500.1.p  98 RKKLRLTKEQSTLLEDTFRAHNILSHAQKQELARQVNLSTRQVEVWFQNRRARTKLKQTEVDCEILKRCCESLTGENQRLRLELAQLQR 186
                           69************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-1878152IPR009057Homeodomain-like
SuperFamilySSF466892.17E-1979155IPR009057Homeodomain-like
PROSITE profilePS5007117.49194154IPR001356Homeobox domain
SMARTSM003891.2E-1496158IPR001356Homeobox domain
CDDcd000862.40E-1598155No hitNo description
PfamPF000465.4E-1698152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
SMARTSM003404.0E-14154198IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-9154185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSYSTRAMEE EGFGKSWLGL GIGGGDLMKR SRSPAPVQFD LMLFPRSVKE EAAATASKKA  60
EKGARKRSKT TITDDDGQSS HGGPSPSDDD VAVGAGARKK LRLTKEQSTL LEDTFRAHNI  120
LSHAQKQELA RQVNLSTRQV EVWFQNRRAR TKLKQTEVDC EILKRCCESL TGENQRLRLE  180
LAQLQRSAAA AAGLYVQSFP APATAMASAI CPSCDKVTVT SGGGETSGKS STSYSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G247500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554319e-52EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438940.11e-174homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F65e-59HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLC5Z8U01e-173C5Z8U0_SORBI; Uncharacterized protein
STRINGSb10g028630.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-38HD-ZIP family protein