PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G253300.2.p
Common NameSb10g029130, SORBIDRAFT_10g029130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 1076aa    MW: 119670 Da    PI: 6.7208
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G253300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.5e-2371172199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F
  Sobic.010G253300.2.p  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIF 157
                           99*****************************954.4444.48*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++++l+++++r+
  Sobic.010G253300.2.p 158 V--RDERQQLLLGIRRA 172
                           *..4577788***9997 PP
2Auxin_resp118.45.8e-39197280183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sobic.010G253300.2.p 197 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                           79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-4360200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-4163186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1970162No hitNo description
PROSITE profilePS5086311.89971173IPR003340B3 DNA binding domain
SMARTSM010197.4E-2371173IPR003340B3 DNA binding domain
PfamPF023626.9E-2171172IPR003340B3 DNA binding domain
PfamPF065071.0E-33197280IPR010525Auxin response factor
PfamPF023091.0E-99411027IPR033389AUX/IAA domain
PROSITE profilePS5174527.2119421026IPR000270PB1 domain
SuperFamilySSF542772.35E-79541021No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MQKDVDGHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLLPVTSYG KEALQLSELA  60
LKQPRPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDNV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA LYGNQISLGM  240
RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFIC PPPFFGSKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTVMPGL  360
SLVQWMNMNM QQNSSFGNSA MQSEYLRSLS NPNMQNLGAA DLSRQLNMQN QILQQNSIQF  420
SSPKLPQQMQ PVNELSKASL PLNQLGVGTK QQEQTQDPSS LQRQQQSMNQ LLPLSQSQTN  480
LVQAQVLIQN QMQQQQQPPS MTQNLQPAAS QSLLLPHQQQ QQHQQQKLVH QQQQLLLQQQ  540
QLQQQQQNQQ QLNKMAAQVP NLAPHQLQLS DQQLQLQLLQ KLQQQHQSLL SQPGVTLAQL  600
PLIQEQQKLI IDMQQQLSNS QSLSQQQIMT QQSTKVPSQA TPPPPTGQQE SQQKLPQKHV  660
GFTDTSHTAI PPTTSVNAIS AVGSPLMATG ATHSVLTDEI PSCSTSPSTA NGNHLLQPVL  720
GRNQQCSVIN YEKLPQSTAP MSIPSSLEAV TATPRSIKEL PKLNSNVKQS VMASKLPNTG  780
PVPQNLANNA PPTDYLETAS SATSVWLSQA DGLLHHGFPM SNFNQQQMFK DVAPETDIHG  840
ADPSNNTLFG INGDGQLGFP MGADGFLSNG IDASKYQNHI SADIDGNYRI PKDGQQEISS  900
SMVSQSFGAS DMAFNSIDSG MNDGGFVNRT SWPPAPPLKR MRTFTKVYKR GAVGRSIDIS  960
QFNGYDELKH ALARMFSMEG QLEERQRIGW KLVYKDHEDD ILLLGDDPWE EFVNCVKCIR  1020
ILSPQEVQQM SLDGDLGNNI LPNQACSSSD GGNAWRARCD QNSGNPSTGS YDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-141930196388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G253300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437545.20.0auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A194YLE50.0A0A194YLE5_SORBI; Auxin response factor
STRINGSb10g029130.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-177auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]