PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G257000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 492aa    MW: 53924.9 Da    PI: 4.0052
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G257000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.63.2e-09186209225
               G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                           +r+ Wt eLHe+F+eave LGG+e
  Sobic.010G257000.1.p 186 NRITWTIELHEKFLEAVETLGGNE 209
                           79********************86 PP
2Response_reg25.19e-1081202105
                           EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.....HHHHESEEEEESSCTTS.EHHHHHHHHHHHT....TTSEEEEEEST CS
          Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealell.....kekdpDlillDiempgm.dGlellkeireee....pklpiivvtah 80 
                           l+ d +p+ ++ + + l k ++ +v  ++++e+al+ +     ke + Dl+l+D+++ +m  G  + + +  +      ++p  ++ + 
  Sobic.010G257000.1.p   8 LVLDSDPTSLSTISETLAKFNF-KVFPFQTAEAALDFIeggaaKEAELDLVLVDVNLNNMaPGTSANSDLLHHYvlneLEVPLTAMCSC 95 
                           78899*****************.***************555544555************657888888886666676689********* PP

                           TTHHHHHHHHHTTESEEEESS--HH CS
          Response_reg  81 geeedalealkaGakdflsKpfdpe 105
                           +++e + +++++Ga  ++ Kp d++
  Sobic.010G257000.1.p  96 DDQEALSKCMNLGACFHVLKPLDRR 120
                           *********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.13E-132135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-133137No hitNo description
PROSITE profilePS5011019.3276130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.11E-58130No hitNo description
PfamPF000726.0E-78120IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.601.2E-6183210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MMERLSALVL DSDPTSLSTI SETLAKFNFK VFPFQTAEAA LDFIEGGAAK EAELDLVLVD  60
VNLNNMAPGT SANSDLLHHY VLNELEVPLT AMCSCDDQEA LSKCMNLGAC FHVLKPLDRR  120
SFGVLWHQAL EHKSKKAAVQ GPTLNSTRNG MVSSSSTAKP KEVLILERND LSDPEINGHE  180
EPKKRNRITW TIELHEKFLE AVETLGGNEC YGAFTEISGS SNMITSNQVG ENNRTEFARD  240
NDHMENINLL KVYGAFIENA GSSSLLTSDQ VEQNNLTEDA RNNDAMGKNN FFKGTVDPKY  300
NASMDFSVAW AHLESNDLDL TGPSDGREEA YSFRMSQLES LGLEVLHDNA CNDALRSVDL  360
INIDEPVTQG SQEQQSLGME DLQQVDDIPW DDALISVGLI NLLDEPMTEE AAVGGSQDQE  420
SLALEVLQAG NNAWDDDLRS ARMVNLLDEP VAQEATIGDA LMDDPVSPIA QDDVLWAWSP  480
SMPAVDYGML F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G257000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305724.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305725.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305726.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305727.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305728.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305729.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305730.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305731.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305732.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305733.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305734.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305736.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305737.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305738.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305739.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305740.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305741.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305742.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305743.10.0uncharacterized protein LOC110431236 isoform X1
RefseqXP_021305754.10.0uncharacterized protein LOC110431236 isoform X5
TrEMBLA0A194YLI80.0A0A194YLI8_SORBI; Uncharacterized protein
STRINGGRMZM2G133262_P011e-125(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Representative plantOGRP1067657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.15e-10response regulator 20