PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G259400.1.p

Common Name

Sb10g029595, SORBIDRAFT_10g029595

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 219aa MW: 23135.1 Da PI: 9.8096

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G259400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.9	5.9e-32	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka ++ r++a+++l++eA++r rdP G+++ ++ l+++ + Sobic.010G259400.1.p 11 ACAVCKHQRRKCEPNCELATYFPAHRMNDFRALHLVFGVANLTKLIKANaSDAARRRAAETLTWEARWRERDPSDGCYREVSCLRRDNA 99 7********************************************9835555******************************* PP DUF260 89 qlkaelallkee 100 l+ae a+l+++ Sobic.010G259400.1.p 100 VLRAENAALRRQ 111 ***9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.638	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-28	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MTGGGNGGRG ACAVCKHQRR KCEPNCELAT YFPAHRMNDF RALHLVFGVA NLTKLIKANA 60 SDAARRRAAE TLTWEARWRE RDPSDGCYRE VSCLRRDNAV LRAENAALRR QLAEQQQLLL 120 CWSNACSNTG GALLHSASAN NGTPPCGGDG LLTAARPHHA PAAPAAMHTT LAYRGMPVCT 180 MTTANGGGRR PASDAAAIAI RGGGGQVDAS RDNKSSAR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	7	112	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	7	112	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G259400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU973222	1e-150	EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437573.2	1e-158	LOB domain-containing protein 2
TrEMBL	A0A194YLK3	1e-157	A0A194YLK3_SORBI; Uncharacterized protein
STRING	Sb10g029595.1	1e-150	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33
Representative plant	OGRP14214	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	4e-21	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Sobic.010G259400.1.p
Entrez Gene	8064971