PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G261700.1.p
Common NameSb10g029800, SORBIDRAFT_10g029800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SRS
Protein Properties Length: 346aa    MW: 34065.6 Da    PI: 8.7735
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G261700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702213.16.5e-661142764154
                DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrel..ks 80 
                            ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+s+          a+aaskr+rel  + 
  Sobic.010G261700.1.p 114 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANSNsasaaaaaaaAAAASKRPRELvrSL 202
                           4579****************************************************999988877888888887777888888875533 PP

                DUF702  81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            +  +++s+ +++++s+      ++P+e+++eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  Sobic.010G261700.1.p 203 GRLPSANSAMVTTTTSSGDGGGGRFPPELNVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 276
                           334444445555555555666777***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-62115275IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-25117159IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.7E-18226274IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGFSLRGGG GGGGGRGGDR GGDHPIGADS LFLYARGAAA AAADTAASGG GGGGGIGFQL  60
WHPHQQAAAA AAAPHTSQFF SSGAVATGVV LGFSSHDGGA GGIGGPGGAG GGRAGTSCQD  120
CGNNAKKDCA HMRCRTCCRS RGFSCPTHVK STWVPAAKRR ERQQQLAALF RGAANSNSAS  180
AAAAAAAAAA ASKRPRELVR SLGRLPSANS AMVTTTTSSG DGGGGRFPPE LNVEAVFRCV  240
RIGPVDEPDA ELAYQTAVSI GGHTFKGILR DHGPADDAAV GQLPPSSAEY HQLTAGQARE  300
GSSPAGSSEA AATVATSAAV LMDPYPTPIG AFAAGTQFFP HNPRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615RGGGGGGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G261700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-150AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-150AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-150AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437584.10.0protein SHI RELATED SEQUENCE 1
RefseqXP_021304847.10.0protein SHI RELATED SEQUENCE 1
TrEMBLC5Z1S10.0C5Z1S1_SORBI; Uncharacterized protein
STRINGSb10g029800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-52Lateral root primordium (LRP) protein-related