PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G262200.2.p
Common NameSb10g029840, SORBIDRAFT_10g029840
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 305aa    MW: 31755.3 Da    PI: 4.4487
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G262200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.6e-07346441
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           +C+ ++  ++   C  ++  lC  C    H+       H+++p
  Sobic.010G262200.2.p  3 VRCDFCGAAPAAVLCWADEAALCSACDRRVHRAnklvhkHRRIP 46
                          69*****************************7799996666655 PP
2zf-B_box25.43e-0864105338
              zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                           ++ C+ ++e +   fC +++  lC+dC + +H+       Ht
  Sobic.010G262200.2.p  64 APLCDVCKERRGLVFCVEDRAILCPDCDDPIHSAndltakHT 105
                           579*****************************6577777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.253147IPR000315B-box-type zinc finger
SMARTSM003363.8E-9147IPR000315B-box-type zinc finger
PfamPF006433.1E-6347IPR000315B-box-type zinc finger
CDDcd000212.81E-7347No hitNo description
PROSITE profilePS501199.08662109IPR000315B-box-type zinc finger
SMARTSM003361.4E-1462109IPR000315B-box-type zinc finger
PfamPF006437.2E-665106IPR000315B-box-type zinc finger
CDDcd000217.17E-865109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQVRCDFCGA APAAVLCWAD EAALCSACDR RVHRANKLVH KHRRIPLVQP ASGNVSDADA  60
DAAAPLCDVC KERRGLVFCV EDRAILCPDC DDPIHSANDL TAKHTRFLLV GAKLSAELVD  120
QAPASPDDDD DDDDACGRDT RAAAEPDAVP ALGAQGSCAA KASALESGSV GGGSSISDYL  180
TNICPGWRVD DLLFDDPAFS AASKASGYSD DGHEQVPSLD ADLFDVVAGG RPGKRGGVWS  240
TGAGALGFDK ATPASVVAVP TQGFVREMSW NSDSDSDVFA VPEFPHPPPA KKARPAPAST  300
FWCF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G262200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304501.10.0B-box zinc finger protein 20
TrEMBLA0A194YLK10.0A0A194YLK1_SORBI; Uncharacterized protein
STRINGSb10g029840.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.17e-40salt tolerance homolog2