PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G269000.1.p
Common NameSb10g030400, SORBIDRAFT_10g030400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 161aa    MW: 17691 Da    PI: 8.729
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G269000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.21.5e-1788144359
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                           +++r +r+++NRe+A rsR+RK+a++e+Le++v  L  eN +Lkk+ +elk eva+l
  Sobic.010G269000.1.p  88 DDRRSIRMMRNRESALRSRARKRAYVENLEKEVRRLVDENLKLKKQCKELKLEVAAL 144
                           5799************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.8E-1683144No hitNo description
SMARTSM003381.9E-1486150IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.5388144IPR004827Basic-leucine zipper domain
PfamPF001701.1E-1489144IPR004827Basic-leucine zipper domain
CDDcd147073.49E-1890144No hitNo description
SuperFamilySSF579591.81E-1290144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAANYHHYQM AVHAAAAAAA WREPDSPQLS FVSGCSSLFS ISTLQDDDDD GRPAVVIAGH  60
AMPSTPVSLA GFAAGDEVDM EVQQASGDDR RSIRMMRNRE SALRSRARKR AYVENLEKEV  120
RRLVDENLKL KKQCKELKLE VAALVLPTKS SLRRTSSTQF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G269000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0338580.0BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439039.11e-115protein FD
TrEMBLC5Z1Y01e-114C5Z1Y0_SORBI; Uncharacterized protein
STRINGSb10g030400.11e-115(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40173072
Representative plantOGRP9528513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.11e-09bZIP family protein