PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.K006800.1.p
Common NameSb0012s010230, SORBIDRAFT_0012s010230, SORBI_K006800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 1022aa    MW: 113463 Da    PI: 5.7916
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.K006800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11728.6e-54211382118
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+een 
  Sobic.K006800.1.p  21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEENI 112
                        45559*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                        +fqrr+yw+Lee++ +ivlvhyle+k
  Sobic.K006800.1.p 113 NFQRRTYWMLEEDYMHIVLVHYLETK 138
                        ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.86117143IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-7220138IPR005559CG-1 DNA-binding domain
PfamPF038596.8E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.7E-4445532IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.4E-16446532IPR014756Immunoglobulin E-set
PfamPF018338.0E-6446524IPR002909IPT domain
CDDcd002041.73E-13591738No hitNo description
SuperFamilySSF484038.08E-17614740IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-17641741IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.683647679IPR002110Ankyrin repeat
PROSITE profilePS5029717.29647740IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736680712IPR002110Ankyrin repeat
SuperFamilySSF525401.78E-8839892IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086841863IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407842871IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032843862IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022864886IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56865889IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4867886IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MASAEARRLA VVPQLEIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW  120
MLEEDYMHIV LVHYLETKGG KSSRARGNNN IIQGTAVDSP VSQLPSQTME GESSLSGQAS  180
EYEEAESDIY SGAGYNSFTW MQQHENGTGP VTNSSVFSSY TPASSVGNYQ GLHATQNTSF  240
YPVNQHNSPL ILNGSSAMLG TNGRANQTDL PSWNSVIELD EPVQMPHLQF PVPPDQSATT  300
EGLGVDYLTF DEVYSDGLSL KDIGAAGTHG ESYLQFSSAT GDLSATENSF PQQNDGSLEA  360
AIGYPFLKTQ SSNLSDILKD SFKKTDSFTR WMSKELPEVE DSQIHSSSGG FWSTEEANNI  420
IEASSREPLD QFTVSPMLSQ DQLFSIVDFA PNWTYVGSKT KILVAGSILN DSQINEGCKW  480
SCMFGEVEVP AKVLADGTLI CYSPQHRPGR VPFYITCSNR LACSEVREFE FRPTVSQYMD  540
APSPHGETNK VYFQIRLDKL LSLGPDEYQA TVSNPSLEMI DLSKKISSLM ASNDEWSNLL  600
KLAVDNEPST ADQHDQFAEN LIKEKLHVWL LNKVGMGGKG PSVLDDEGQG VLHLAAALGY  660
DWAIRPTLAA GVNINFRDVH GWTALHWAAF CGRERTVVAL IALGAAPGAL TDPTPDFPGS  720
TPADLASANG QKGISGFLAE SSLTSHLQAL NLKEANMSQI SGLPGIGDVT ERDSLQPPSG  780
DSLGPVRNAA QAAAQIYQVF RVQSFQRKQA AQYEDDKGGM SDERALSLLS VKPPKSGQLD  840
PLHSAATRIQ NKFRGWKGRK EFLLIRQRIV KIQAHVRGHQ VRKHYRKIVW SVGIVEKVIL  900
RWRRRGAGLR GFRSTEGSVE SSSGGTSSSS IQDKPSGDDY DFLQEGRKQT EERLQKALAR  960
VKSMAQYPEA RDQYQRILTV VSKMQESQAM QEKMLEESAE MDFMSEFKEL WDDDTPIPGY  1020
F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.57930.0embryo| leaf| ovary| panicle| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.K006800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002489212.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLC6JRU10.0C6JRU1_SORBI; Uncharacterized protein
STRINGSb0012s010230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains