PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.K042700.1.p
Common NameSORBI_K042700
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27143.1 Da    PI: 10.2669
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.K042700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.4e-201664149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k i+ +  rqv+fskRr  ++KKA+ELS+LC+aeva++ fs+ g+ + +
  Sobic.K042700.1.p 16 KTIKGEEARQVSFSKRRPSLFKKASELSTLCGAEVAIVTFSPGGRCFSF 64
                       56888999**********************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-25867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-24977IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-161030IPR002100Transcription factor, MADS-box
PfamPF003193.4E-221864IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVKGKSTKGR QRIEMKTIKG EEARQVSFSK RRPSLFKKAS ELSTLCGAEV AIVTFSPGGR  60
CFSFGHPSTL SVADRFLVEH TLDGLTIGSG SHGTQGLTGT SHEMNHQVME LQQLMETEKR  120
SKERAVEAMK RESQGPVMQL LNANVGALGL QELEVLRKDL YMVHDMVKER SHEVLEDAMR  180
VRRPPPQPRM HMVAMPSQVF FGGQSAGTMY TTFPSLSNGP RKGVHVNSLL HGSLGGLGNY  240
FNGQFGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.K042700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445266.21e-141agamous-like MADS-box protein AGL29
TrEMBLA0A109ND600.0A0A109ND60_SORBI; Uncharacterized protein
STRINGSb06g015640.11e-152(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-31AGAMOUS-like 61