PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.K044414.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 123aa    MW: 13411.9 Da    PI: 7.9177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.K044414.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.4e-12471073298
                        --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          + +tl de+  ++ + +  + ++    l++GW +Fv +++L +gD +vF+l++r+ f  +v ++r
  Sobic.K044414.1.p  47 LCIGITLVDEEDDKFCMLY--QPSK--AALSTGWGGFVVDHKLLDGDCLVFQLIERTMF--KVYIIR 107
                        556799*************..6666..569************************98777..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023621.4E-945108IPR003340B3 DNA binding domain
CDDcd100171.94E-1347107No hitNo description
PROSITE profilePS508639.17851109IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-1251108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-1059108IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MLVLMLTCFL VPLLRYGGGS VGQARIWKLL GILTLLGGRK LADKSALCIG ITLVDEEDDK  60
FCMLYQPSKA ALSTGWGGFV VDHKLLDGDC LVFQLIERTM FKVYIIRAAS YLKASTDEAS  120
SF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.K044414.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311549.12e-45B3 domain-containing protein Os06g0194400 isoform X1
RefseqXP_021311550.12e-45B3 domain-containing protein Os06g0194400 isoform X2
SwissprotQ69V363e-23Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A1W0VQL52e-82A0A1W0VQL5_SORBI; Uncharacterized protein
STRINGSb3113s002020.17e-37(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]