PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000222
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 387aa    MW: 41765.4 Da    PI: 4.7491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17300396PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-468133728PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-468133729PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-63824PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-63826PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19128177255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Sof000222 128 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 177
                69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.933128185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-32128186IPR001471AP2/ERF domain
SMARTSM003802.0E-37128191IPR001471AP2/ERF domain
CDDcd000183.14E-32128186No hitNo description
SuperFamilySSF541711.7E-22128187IPR016177DNA-binding domain
PfamPF008476.4E-12129177IPR001471AP2/ERF domain
PRINTSPR003672.5E-11129140IPR001471AP2/ERF domain
PRINTSPR003672.5E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCGGAILSGF IPPSRVAAAA AKKKQQRRVT ADLLWPGPGK KGAPQEEEDD FEADFREFER  60
GLSEDDVDGA GEGGDDEVQE LPPPEPARFA FAAAAKAPRP AVDGVMTPKN VQGDRPTANS  120
VKRNRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT AEEAARAYDA EARKIRGKKA  180
KVNFPDEVPG AQKSTAKPTA ANATKLALPP KACADEVFNN LSNDNNDLFA MFAFNDNKVP  240
VKPAEGASFL PSVKPLVPNK RSATNMLSDQ SSNSYGSSDF GWDDDTMTSD YTSVFAPNNV  300
IPASYMQGGV SKRMRNNYGV AMLQGNGEPS LAQVMAGFDP EMNYQPLPYV ESSSSDASIE  360
QTDIPQDGAS NGDIWSLDEL LMAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20127188163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20128188566ATERF1
3gcc_A3e-20128188566ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.179341e-152bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309361.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A1B6QCP00.0A0A1B6QCP0_SORBI; Uncharacterized protein
STRINGSb02g025530.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-25ERF family protein