PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000226
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 344aa    MW: 37551.8 Da    PI: 4.9664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17299699PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-67790PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-67791PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-67793PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-67796PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18107156255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++a +++++g
  Sof000226 107 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 156
                69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-21107166IPR016177DNA-binding domain
PROSITE profilePS5103223.644107164IPR001471AP2/ERF domain
SMARTSM003801.3E-34107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-30107165IPR001471AP2/ERF domain
CDDcd000186.16E-32107165No hitNo description
PRINTSPR003674.5E-10108119IPR001471AP2/ERF domain
PfamPF008472.0E-11108156IPR001471AP2/ERF domain
PRINTSPR003674.5E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MCGGAILSDI IPPPRRVTAG HLWPESKKPR RAAGAGRRRA PVEEEEDFEA DFEVFEVESG  60
ESELESEDEA KPFAAPRSGV ARDGLNTSPA GVDGPAANSV KRKRKNQFRG IRRRPWGKWA  120
AEIRDPRKGV RVWLGTFNSP EEAARAYDAE ARRIRGKKAK VNFPDEFSTI SQKHRAGPTS  180
LKVPEMDVEE KPIIKMANSN AYHYPVVGHN MPEPFMHTQN MSFAPLVNSA APVQEPFVNL  240
SSDQGSNSFS CSDFSLENDT RTPDITSVVV GESAFAQNAD HAVVPPVMGN ASVDLTELEP  300
YMNFLMDSGS EDSIDTLFSC DGSPDVVSNI GPLGALMTCP CLLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201071711479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100114KRKRKNQFRGIRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.12270.0bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436631.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-113ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLC5Z5Y30.0C5Z5Y3_SORBI; Uncharacterized protein
STRINGSb10g006260.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-41related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]