PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof000314

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 496aa MW: 55565.3 Da PI: 6.4531

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-36406	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	243.3	9.7e-75	245	486	2	244
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cAea+s++ e+ +l+++ + +s +g+p+qRl ay++e+L ar a+s++++y+al+++e + s e l+++k++++++P++kf++++aN a Sof000314 245 KQLLTKCAEALSEERIEEFLNLVQQARAVVSITGEPIQRLGAYLLEGLVARHANSGTNIYRALKCREPE---SNELLSYMKILYNICPYFKFGYMAANGA 341 689***************************************************************9...99********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I ea+ +e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+ + e l +g+ L+++ ee+++p+ef++l ++++ e+L+++pg Sof000314 342 IAEALRNEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDLVGKMLKSMSEEFKIPLEFTPLPGIYATQVTKEMLDIRPG 441 *********************************************999999**********************97779999******* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244 EalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++v Sof000314 442 EALAVNFTLQLHHTPDESVDVNNPRDGLLWMVKGLSPKVTTLVGT 486 ***************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.513	218	496	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-72	245	486	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
XWSXHASELE RERERWCWCR GGGGGVGSGC AYRRRSWSTN AHSSIMDLHQ LLKYRLTGDN 60 VFYEFPTENN LANTPWPASP LKSEFSSSPY TPLSSQLECD NLSALSNTPD NQSSTETISA 120 QPISPLEVDS SYRQAAILRE NTQVRPDPLY ATSRHNMQHA LREIETVLMA PDAEDAATST 180 KHEFVEHKPA QLMRQRSRTW SHESRQPSPG VVRTQFASGY PTASYEFRPE KRLRELREDP 240 QSMVKQLLTK CAEALSEERI EEFLNLVQQA RAVVSITGEP IQRLGAYLLE GLVARHANSG 300 TNIYRALKCR EPESNELLSY MKILYNICPY FKFGYMAANG AIAEALRNED KIHIIDFQIA 360 QGTQWITLIQ ALAARPGGPP HVRITGIDDP VSEYARGEGL DLVGKMLKSM SEEFKIPLEF 420 TPLPGIYATQ VTKEMLDIRP GEALAVNFTL QLHHTPDESV DVNNPRDGLL WMVKGLSPKV 480 TTLVGTGVAQ PTRPCS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

XWSXHASELE RERERWCWCR GGGGGVGSGC AYRRRSWSTN AHSSIMDLHQ LLKYRLTGDN  60
VFYEFPTENN LANTPWPASP LKSEFSSSPY TPLSSQLECD NLSALSNTPD NQSSTETISA  120
QPISPLEVDS SYRQAAILRE NTQVRPDPLY ATSRHNMQHA LREIETVLMA PDAEDAATST  180
KHEFVEHKPA QLMRQRSRTW SHESRQPSPG VVRTQFASGY PTASYEFRPE KRLRELREDP  240
QSMVKQLLTK CAEALSEERI EEFLNLVQQA RAVVSITGEP IQRLGAYLLE GLVARHANSG  300
TNIYRALKCR EPESNELLSY MKILYNICPY FKFGYMAANG AIAEALRNED KIHIIDFQIA  360
QGTQWITLIQ ALAARPGGPP HVRITGIDDP VSEYARGEGL DLVGKMLKSM SEEFKIPLEF  420
TPLPGIYATQ VTKEMLDIRP GEALAVNFTL QLHHTPDESV DVNNPRDGLL WMVKGLSPKV  480
TTLVGTGVAQ PTRPCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-39	228	484	3	249	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460825.1	0.0	chitin-inducible gibberellin-responsive protein 1
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	C5XAU2	0.0	C5XAU2_SORBI; Uncharacterized protein
STRING	Sb02g035680.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-102	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]