PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof000727

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 319aa MW: 34024 Da PI: 5.8214

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-114096	PU_ref	plantGDB	View CDS
PUT-157a-Saccharum_officinarum-114097	PU_unref	plantGDB	View CDS
PUT-157a-Saccharum_officinarum-114098	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	55	1.7e-17	143	194	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l ++ + Sof000727 143 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQL---TDANQ 194 68***************************************999555...44444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-16	141	205	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.185	143	195	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-13	144	196	No hit	No description
Pfam	PF00170	6.9E-15	144	193	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-13	145	196	No hit	No description
CDD	cd14702	4.62E-23	146	196	No hit	No description
PROSITE pattern	PS00036	0	148	163	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MKKCPSELEL EAFLRCREDA TAAAVAAGVQ KPVHDVAALA PFAAGGVFPP SDLSAFSFAD 60 SNTLNGSIHN HLWSHNHNVR HPAVSTTIES QSSICAAASP TSATNLYLKE SQTLGGTSGS 120 DSDSESLFDI EGGPCEQSTN PQDVKRMRRM VSNRESARRS RKRKQAHLAD LETQVDQLRG 180 ENASLFKQLT DANQQFTTAV TDHRILKSDV EALRVKVKLA EDMVARGALS CGLGSLGLSP 240 VLNPRQACRG PDVLSGLDFP GDDACFTGLS PTEQLQNSPL QSIASLESLE NRMVSEVTSC 300 VGPGVDVSPW DHVNGGLSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	RRSRKRK
2	157	164	RRSRKRKQ
3	159	164	SRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.6522	0.0	bud\| callus\| crown\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269\|PubMed:11133985}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315644.1	0.0	basic leucine zipper 9-like isoform X1
Swissprot	Q6H500	1e-134	RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBL	A0A194YMZ4	0.0	A0A194YMZ4_SORBI; Uncharacterized protein
STRING	Sb04g005020.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-39	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]