PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000761
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 306aa    MW: 31983 Da    PI: 10.0042
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17332729PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-64099PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-64100PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.4e-09106131227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C  +  t  Ck+Gd+C+FaH++
  Sof000761 106 KTRMCTKYNTTEGCKFGDKCHFAHSE 131
                9***********************95 PP
2zf-CCCH36.96.3e-12273298127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC +f + G C +GdrC+FaHg+
  Sof000761 273 YKTKLCENFVK-GACTFGDRCHFAHGE 298
                9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-73562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3243765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53862IPR000571Zinc finger, CCCH-type
PfamPF146081.54562No hitNo description
SuperFamilySSF902292.88E-8104135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.036104131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13106136IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.102.1E-15172242IPR004088K Homology domain, type 1
SMARTSM003223.1E-11172242IPR004087K Homology domain
PROSITE profilePS5008415.179173237IPR004088K Homology domain, type 1
CDDcd001053.69E-14175237No hitNo description
SuperFamilySSF547912.92E-15175266IPR004088K Homology domain, type 1
PfamPF000136.7E-11175238IPR004088K Homology domain, type 1
SuperFamilySSF902294.71E-9270302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-14271302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.103272299IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-8272298IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9273298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGAGAARKR SRPETANGAV AGGKRSKDTE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF  60
LHFVPGGYPA VAKMLNLGSP AVSAPSRTHV DHAALTGASH PASTGKTRMC TKYNTTEGCK  120
FGDKCHFAHS ERELGKPAYM SHEGPPMGGR YGGRPEPLQQ ASMGPPAGNF GASATAKISV  180
DASLAGGIIG KGGVNTKQIS RVTGVKLSIR DHESNPSQKN IELEGNFDQI KQASDMVRDL  240
IATISASMPV KNPSAAAAPA GGRGGGLWGR NNYKTKLCEN FVKGACTFGD RCHFAHGETE  300
QRRGAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.75650.0bud| crown| inflorescence| leaf| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-154C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLC5Y9Z90.0C5Y9Z9_SORBI; Uncharacterized protein
STRINGSb06g032000.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-50C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]