PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000828
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HB-other
Protein Properties Length: 285aa    MW: 30996.5 Da    PI: 8.9397
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17397407PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-19075PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-623133726PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.57e-1157941954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
               Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Sof000828 57 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 94
               554459******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.4873598IPR001356Homeobox domain
CDDcd000861.58E-143899No hitNo description
SMARTSM003892.9E-1138102IPR001356Homeobox domain
SuperFamilySSF466891.45E-1740105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-2941102IPR009057Homeodomain-like
PfamPF059202.0E-195594IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
XNDSIGKDDM ANFALMGGGA GLLRGNNVNA FGQPHNIWRP QRGLPERAVS VLRSWLFEHF  60
LHPYPTDSDK QMLAKQTGLT RNQVSNWFIN ARVRLWKPMV EEIHNLEMRQ LQKNTSVDKN  120
QLGMQQILHS SDSSGKPSDP SNSQRGQSSG MTRNLSSPAS RHLQDELSQM PHDMAGQVSF  180
AYNGLPAHHG LALSHPQQAE VVSTGGIGVG GVAAGGGGVS LTLGLHQNNR TYIAEPLPAA  240
LPLNLPHRFG LEDVSDAYVM GSFGGQDRHF TKGIGGHHLL HELRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-1744101158Homeobox protein Meis1
4xrs_B2e-1744101158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.102500.0crown| inflorescence| meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439906.10.0BEL1-like homeodomain protein 9
TrEMBLC5YZ690.0C5YZ69_SORBI; Uncharacterized protein
STRINGSb09g022270.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-43BEL1-like homeodomain 8