PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000831
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 283aa    MW: 30779 Da    PI: 9.9112
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17402808PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-121789PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-121790PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08151247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++WT eE++ l  + +++G++ W tI +          R+  ++k++w+++
        Sof000831  1 QKWTSEEEDALRAGGRKHGTDKWPTIQKDPElspglSSRSNIDLKDKWRNL 51
                     69****************************9999**99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.647155IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-10151IPR009057Homeodomain-like
SuperFamilySSF466891.71E-11154IPR009057Homeodomain-like
CDDcd116602.79E-16151No hitNo description
PfamPF139214.3E-5353No hitNo description
SuperFamilySSF467857.48E-16105185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-13106181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.1E-15106171IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150425.086108176IPR005818Linker histone H1/H5, domain H15
PfamPF005382.0E-9110168IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
QKWTSEEEDA LRAGGRKHGT DKWPTIQKDP ELSPGLSSRS NIDLKDKWRN LSFSASGLGS  60
SKVRVPRITG PASSPSSSSQ ALLLPAPNKV TEATLPADAE KKPQDGKTPP KYGAMIMEAL  120
SELNEPNGSD IAAIFRFIEE RHAVQPTFRR FLTAKLRRLA DSSKIVKIDK SYRLPDSFAT  180
RTPAPIKASA PKQKDPSKPS KVSKTIGLFT ASSPALEAAM AAAVKVADAE AKAHDAHDQM  240
MEAERILKMA EDTESLLTIA AEIYDRCSRG EITTLVPVAQ RDF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.99160.0bud| crown| inflorescence| leaf| meristem| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456231.11e-168single myb histone 4
SwissprotQ6WLH41e-160SMH3_MAIZE; Single myb histone 3
TrEMBLC5XHN51e-167C5XHN5_SORBI; Uncharacterized protein
STRINGSb03g032530.11e-167(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-44MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]