PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000837
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HD-ZIP
Protein Properties Length: 281aa    MW: 30285.2 Da    PI: 4.7042
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-59324PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-59325PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-599133733PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.5e-1949103356
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++++eq+++Le+ Fe  n+++  e++++LA++lgL+ rqV vWFqNrRa++k
  Sof000837  49 KKRRLNTEQVRALERSFETeNNKLEPERKARLARELGLQPRQVAVWFQNRRARWK 103
                456899************88**********************************9 PP
2HD-ZIP_I/II131.82.5e-4248141193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl++eqv++LE+sFe+e+ kLeperK++lareLglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+ke
    Sof000837  48 EKKRRLNTEQVRALERSFETENnKLEPERKARLARELGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDALRRDKDALLDEIKE 141
                  69*****************9988******************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-1833107IPR009057Homeodomain-like
SMARTSM003895.9E-1747109IPR001356Homeobox domain
PROSITE profilePS5007117.26548105IPR001356Homeobox domain
PfamPF000464.4E-1649103IPR001356Homeobox domain
CDDcd000863.67E-1749106No hitNo description
Gene3DG3DSA:1.10.10.603.8E-1955104IPR009057Homeodomain-like
PRINTSPR000315.3E-67685IPR000047Helix-turn-helix motif
PROSITE patternPS00027080103IPR017970Homeobox, conserved site
PRINTSPR000315.3E-685101IPR000047Helix-turn-helix motif
PfamPF021835.7E-17105146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKRPSGSISG GGSPGLLPTV HSDDGFGGVG MEDADEDMVL CNGVGFGEKK RRLNTEQVRA  60
LERSFETENN KLEPERKARL ARELGLQPRQ VAVWFQNRRA RWKTKQLERD YAALRHSYDA  120
LRADHDALRR DKDALLDEIK ELKAKLGDED ALSSVKEEPA ASDIEAPVAG AAMAAQGSSD  180
SDSSGVVNDA EKPPSPPAVP AEAAAVAGAS AWQLQHGEVF FHGHLLKVEE DEAAFLGDDD  240
AACGGFFADL QPPPSLPWWT EATDHWAYGG PXGRGGLRGT Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480ERKARLA
297105RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180891e-137bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445988.21e-140homeobox-leucine zipper protein HOX4 isoform X3
SwissprotA2YWC01e-102HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-102HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A2S3I3D91e-118A0A2S3I3D9_9POAL; Uncharacterized protein
TrEMBLA0A2T7D8P01e-118A0A2T7D8P0_9POAL; Uncharacterized protein
STRINGSi014231m1e-117(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-34homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]