PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000943
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27821.5 Da    PI: 6.8057
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S46998091PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-33240PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-33241PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.7e-251261251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  Sof000943 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61
               89********************************************9986 PP
2K-box43.71.2e-15911731698
      K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  +   ++Lk+e+ +   ++R++ Ge+L++Ls+++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k  el een +L++++
  Sof000943  91 IDDGTCSRLKEELAQTSLKLRQMRGEELQRLSVQQLQELEKTLESGLGSVLKTKSQKILDEISGLERKRMELIEENSRLKEQV 173
                44456789************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.151363IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-33362IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-24525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
CDDcd002655.20E-38579No hitNo description
SuperFamilySSF554552.62E-29588IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.79589179IPR002487Transcription factor, K-box
PfamPF014863.6E-1496173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA  60
STSMKQVIDR YDSHSKNLQK SEALSQLQSH IDDGTCSRLK EELAQTSLKL RQMRGEELQR  120
LSVQQLQELE KTLESGLGSV LKTKSQKILD EISGLERKRM ELIEENSRLK EQVTRMARME  180
TQLGVDSEIV YEEGQSSESV TNTSYPRPST DTDDWLDTSL RLGLPFLQLE VMEIXILTLV  240
RDVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-19575373MEF2C
5f28_B9e-19575373MEF2C
5f28_C9e-19575373MEF2C
5f28_D9e-19575373MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.45670.0crown| inflorescence| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:15682279}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307342.11e-158MADS-box transcription factor 47-like isoform X2
RefseqXP_021307343.11e-158MADS-box transcription factor 47-like isoform X2
SwissprotQ5K4R01e-121MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLB5TRK91e-156B5TRK9_SACOF; MADS box protein
TrEMBLC0KIU81e-156C0KIU8_9POAL; MADS box transcription factor
STRINGSb01g044810.11e-155(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]