PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001077
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 204aa    MW: 23947.2 Da    PI: 10.6596
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17280773PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-16851PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-97902PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.29e-55161431128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdee+++ yL +k  + ++   ++i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg+r+nratk+gyWkatgkd+e++++ ++el
  Sof001077  16 LPPGFRFHPTDEEVITSYLLQKFLNPSFAP-HAIGEVDLNKIEPWDLPSKAKMGEKEWYFFCHKDMKYPTGTRTNRATKEGYWKATGKDREIFKQpNREL 114
                79*************************888.78***************99999****************************************9989999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy grap+g+kt+Wvmhe+rl
  Sof001077 115 VGMKKTLVFYMGRAPRGTKTNWVMHEFRL 143
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-6213171IPR003441NAC domain
PROSITE profilePS5100557.4616171IPR003441NAC domain
PfamPF023659.1E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVERSVKSEH GVDLFLPPGF RFHPTDEEVI TSYLLQKFLN PSFAPHAIGE VDLNKIEPWD  60
LPSKAKMGEK EWYFFCHKDM KYPTGTRTNR ATKEGYWKAT GKDREIFKQP NRELVGMKKT  120
LVFYMGRAPR GTKTNWVMHE FRLDGKSRHN NDSNLRFNPK DEWVVCKVHH KGRRRGQHLE  180
ERRRRRAEFL GAGKPKLASS RSAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-571417118168NAC domain-containing protein 19
3swm_B4e-571417118168NAC domain-containing protein 19
3swm_C4e-571417118168NAC domain-containing protein 19
3swm_D4e-571417118168NAC domain-containing protein 19
3swp_A4e-571417118168NAC domain-containing protein 19
3swp_B4e-571417118168NAC domain-containing protein 19
3swp_C4e-571417118168NAC domain-containing protein 19
3swp_D4e-571417118168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174185RGQHLEERRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.227470.0callus| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}.
UniprotTISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448920.11e-123NAC domain-containing protein 77
SwissprotQ5CD172e-93NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLC5Y3M21e-121C5Y3M2_SORBI; Uncharacterized protein
STRINGSb05g001590.11e-122(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-77Arabidopsis NAC domain containing protein 87