PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001089
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 201aa    MW: 22650.9 Da    PI: 7.295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-81887PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-849133731PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13549655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI +Lq
  Sof001089  5 ILMERDRRRKLNDKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 49
               579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-12353No hitNo description
SuperFamilySSF474591.7E-17466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11549IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-15554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
XNKNILMERD RRRKLNDKLY ALRSVVPNIT KMDKASIIKD AIEYIEQLQA EERRMLQEVR  60
ALEADAAEER CDYEYDESAL LQAAERGKKR MKRTQSVPSS SVPGPVEVLE LRVSEVGDRV  120
LVVNVTCGKG RDAMARVCRA VEELRLRVIT ANITSVAGCL MHTIFVEVDL DQANRIQMKH  180
MIEAALTQLD AAGSPPSVMS Y
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.133511e-34bud| crown| inflorescence| leaf| meristem| root| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445107.11e-118transcription factor bHLH35
TrEMBLC5YHE61e-117C5YHE6_SORBI; Uncharacterized protein
STRINGSb07g004190.11e-118(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-48bHLH family protein