PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001454
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 448aa    MW: 49544.7 Da    PI: 6.9935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-47529PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-47531PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-06261282223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C +Cgk F+r  nL+ H+r H
  Sof001454 261 FCLICGKGFKRDANLRMHMRGH 282
                5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.98E-5258285No hitNo description
PROSITE profilePS5015711.552260287IPR007087Zinc finger, C2H2
SMARTSM003550.012260282IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5262286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SMARTSM0035571309342IPR015880Zinc finger, C2H2-like
SMARTSM0035522347369IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MASNMARNAP DQQTLRPNSV EQFYFPRPGQ SLPGIPPFFG PPSSSLYLPN DNEARFGNQF  60
ESNPSQNTDW DPQAIVSNLT FLEQKIKKVK DIVQSMNNRE NQVAGGSSEL AAKQQLITAD  120
LTSIIIQLIS TAGSLLPSMK NPLLSSNPAV RQLGNTLGSP MGFGMNANQR PSVDNKTDIP  180
DTGKTSDYDE LMNSLNTAQD ERDELIKCPN PCGGEGSEPT PMEDHDVKES DDGGEGENLP  240
PGSYVVLQLE KEEILAPHTH FCLICGKGFK RDANLRMHMR GHGDEYKTPA ALAKPTKDSG  300
ADHAPVTRYS CPFVGCKRNK EHKKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNTKKFSVI  360
ADLKTHEKHC GRDKWLCSCG TTFSRKDKLF GHVALFQSHT PALPMEDVKV SEASEQPQDS  420
EPLNEMARSM VYCFPSSDGI SKPRHENG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.14331e-149bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149728.20.0uncharacterized protein LOC100283355
RefseqXP_020397739.10.0uncharacterized LOC100283355 isoform X1
RefseqXP_020397740.10.0uncharacterized LOC100283355 isoform X1
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A059Q0T00.0A0A059Q0T0_9POAL; Uncharacterized protein
STRINGGRMZM2G075956_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-145C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]