PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof001513

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 430aa MW: 48318.4 Da PI: 7.0256

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17301899	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-112243	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	6e-08	163	186	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +te C ffa G C+ G+ C+F+H+ Sof001513 163 GTEACVFFAN-GSCNLGAACRFSHS 186 699*8888.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.141	161	186	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-5	161	187	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.7E-5	163	186	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	164	186	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.3	188	216	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0027	189	215	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
FKDKHRLEYL KDVAKTQEPE ESHTFLTKPE EEWCAVHNLV PAAFKNISEI YDDVMMQLHR 60 FRPSFLVKIN PPKFLQPSEF NHTCLHKILD LEMDMDSLSL ENSHSDSQKR CAATPYVSPT 120 DFGTSTIVEL LKTLVKEMKT QHAEEKTISY KGQLGSNVKP TLGTEACVFF ANGSCNLGAA 180 CRFSHSSLAP KPVCKFYLTL QGCRSGNSCP YSHDFGSLVS APVTSGVCSQ EGRATSLCCT 240 RLLPADGDGY ILVMNDKTLE FSSKLSQFYD ACKIVAGTPG LQSAESHSVP KGLKILENLA 300 DPSSLITGLE HKIPVPWTQL KRVFWFADFD NDESATEHAL LRKFFMNIAI KILSERLSDL 360 QVILIMKNTR YVQLQVERLA RECFFSLSES FMFDEATLGW FSDISKHPRR MQVAAPVTYV 420 FKHASFPPLT

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

FKDKHRLEYL KDVAKTQEPE ESHTFLTKPE EEWCAVHNLV PAAFKNISEI YDDVMMQLHR  60
FRPSFLVKIN PPKFLQPSEF NHTCLHKILD LEMDMDSLSL ENSHSDSQKR CAATPYVSPT  120
DFGTSTIVEL LKTLVKEMKT QHAEEKTISY KGQLGSNVKP TLGTEACVFF ANGSCNLGAA  180
CRFSHSSLAP KPVCKFYLTL QGCRSGNSCP YSHDFGSLVS APVTSGVCSQ EGRATSLCCT  240
RLLPADGDGY ILVMNDKTLE FSSKLSQFYD ACKIVAGTPG LQSAESHSVP KGLKILENLA  300
DPSSLITGLE HKIPVPWTQL KRVFWFADFD NDESATEHAL LRKFFMNIAI KILSERLSDL  360
QVILIMKNTR YVQLQVERLA RECFFSLSES FMFDEATLGW FSDISKHPRR MQVAAPVTYV  420
FKHASFPPLT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.914	0.0	crown\| inflorescence\| leaf

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310928.1	0.0	zinc finger CCCH domain-containing protein 4
Swissprot	Q1EHT7	0.0	C3H4_ORYSJ; Zinc finger CCCH domain-containing protein 4
TrEMBL	A0A1B6Q2N7	0.0	A0A1B6Q2N7_SORBI; Uncharacterized protein
STRING	Pavir.J31828.1.p	0.0	(Panicum virgatum)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kisiov VV,Kaiser RI Ab initio/Rice-Ramsperger-Kassel-Marcus study of the singlet C4H4 potential energy surface and of the reactions of C2(X1 Sigmag+) with C4H4(X1A1g) and C(1D) with C3H4 (allene and methylacetylene). J Chem Phys, 2006. 125(13): p. 133113 [PMID:17029439]