PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001523
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 427aa    MW: 47819.2 Da    PI: 6.1055
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17322608PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-67088PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-091832201954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Sof001523 183 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 220
                665559******************************88 PP
2BELL120.76.5e-3946117172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Sof001523  46 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVVSSFDMVAGPGAAKPYTAVALQTISRHFRCLKDAINDQI 117
                689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.4E-331115IPR006563POX domain
PfamPF075261.3E-3924113IPR006563POX domain
PROSITE profilePS5007112.325161224IPR001356Homeobox domain
CDDcd000869.12E-12164225No hitNo description
SMARTSM003893.6E-9164228IPR001356Homeobox domain
SuperFamilySSF466891.54E-17165230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28167230IPR009057Homeodomain-like
PfamPF059206.2E-18181220IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
ASGQQIMYPE HHADGKEPEG GPKSEGVSSN PQESGANAAP ELSTAEKQEL QNKMAKLMAM  60
LDEVDRKYKH YYHQMQSVVS SFDMVAGPGA AKPYTAVALQ TISRHFRCLK DAINDQINVI  120
RKKLGEEENS SGKEGKLTRL RYIDQQLRQQ RAFQQYGMIP QNAWRPQRGL PENSVTILRA  180
WLFEHFLHPY PKDSEKLMLA RQTGLTRSQI SNWFINARVR LWKPMIEDMY KEEIGDIEQD  240
SNSSSDNASR SKGKMASSED KEDLRSSTPR VCESSQLRES RASMRTMNVG GGAPMGFQNE  300
PNPDDSFMNL MLKDQRSNEE DGGLLLHNAV AQHQDENARF MAYHLAELGR YGNGNVSLTL  360
GLQHSSSSLS VPNTQQSFPG VGVGDDDIYN ATAPLGVSVA SSDYESMNQV DQRQRFEQSP  420
LLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16170227562Homeobox protein Meis2
3k2a_B5e-16170227562Homeobox protein Meis2
4xrs_A4e-16170227158Homeobox protein Meis1
4xrs_B4e-16170227158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.30050.0bud| crown| inflorescence| leaf| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963319.10.0BEL1-like homeodomain protein 7
RefseqXP_004963320.10.0BEL1-like homeodomain protein 7
RefseqXP_004963321.10.0BEL1-like homeodomain protein 7
SwissprotO656851e-111BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A1E5WAR50.0A0A1E5WAR5_9POAL; BEL1-like homeodomain protein 6
STRINGSi021437m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-95BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]