 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof001577 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 410aa MW: 44778.8 Da PI: 6.513 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-81546 | PU_ref | plantGDB | View CDS |
| PUT-157a-Saccharum_officinarum-81547 | PU_unref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 405.2 | 6.5e-124 | 38 | 397 | 1 | 354 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
lv++Ll+cAeav+++++++a+al++++ las++g +m+++aayf eALa+r++r ++ p s+ + +++ l+a f+e +P+lkf+h+taNq
Sof001577 38 LVHALLACAEAVQQENFSAADALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR-----FRPTPDSSLLDAAVADFLHA--HFYESCPYLKFAHFTANQ 130
689****************************************************.....44444444444446666666..4***************** PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198
aIlea++g++rvH++Df+i+qGlQWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +L+ +
Sof001577 131 AILEAFAGCRRVHVVDFGIKQGLQWPALLQALALRPGGPPSFRLTGVGPPQHDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGdd 230
**********************************************************************************************655445 PP
GRAS 199 ....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.........lpres.eerik 284
E++aVn+v++lhrll+++++le+ vL +v+ ++P++v+vveqea+hns++Fl+rf+e+l+yys++fdsle pr + ++i+
Sof001577 231 kdeePEVIAVNSVFELHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGAgsgqskmplRPRPAeTDQIM 326
55679***********************....*********************************************87768888888755555577888 PP
GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
E + +r+i+n +egaer+erhetl++Wr+rl+ +GF+pv+l+++a+kqa++ll+ ++ +dgy+vee+
Sof001577 327 TEGVTWARQICNRRGMEGAERTERHETLGQWRNRLGGFGFEPVHLGSNAYKQASTLLALFNgGDGYKVEEK 397
99999****************************************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
TRSSVVEAAP PATQASAAAN GPAVPVVVMD AQEAGIRLVH ALLACAEAVQ QENFSAADAL 60
VKQIPMLASS QGGAMRKVAA YFGEALARRV YRFRPTPDSS LLDAAVADFL HAHFYESCPY 120
LKFAHFTANQ AILEAFAGCR RVHVVDFGIK QGLQWPALLQ ALALRPGGPP SFRLTGVGPP 180
QHDETDALQQ VGWKLAQFAH TIRVDFQYRG LVAATLADLE PFMLQPEGDD KDEEPEVIAV 240
NSVFELHRLL AQPGALEKVL GTVRAVRPRI VTVVEQEANH NSGTFLDRFT ESLHYYSTMF 300
DSLEGAGSGQ SKMPLRPRPA ETDQIMTEGV TWARQICNRR GMEGAERTER HETLGQWRNR 360
LGGFGFEPVH LGSNAYKQAS TLLALFNGGD GYKVEEKGWC PDPKVAYAAR
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.2119 | 0.0 | bud| crown| inflorescence| leaf| meristem| root| seed| stem |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
