PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001804
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 365aa    MW: 39222.5 Da    PI: 6.8678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17442082PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-130133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48.1e-091748132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g W++eEde+l++ + ++G g+W+++++  g
        Sof001804 17 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAG 48
                     678**************************999 PP
2Myb_DNA-binding52.31.3e-16114157146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++
        Sof001804 114 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 157
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7081260IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-211247IPR009057Homeodomain-like
SuperFamilySSF466893.3E-71348IPR009057Homeodomain-like
SMARTSM007171.3E-516110IPR001005SANT/Myb domain
PfamPF002491.1E-61748IPR001005SANT/Myb domain
CDDcd001678.60E-620108No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2191111IPR009057Homeodomain-like
SuperFamilySSF466896.27E-2194167IPR009057Homeodomain-like
PROSITE profilePS5129426.038109163IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-26112163IPR009057Homeodomain-like
SMARTSM007172.5E-16113161IPR001005SANT/Myb domain
PfamPF002498.2E-15114158IPR001005SANT/Myb domain
CDDcd001671.10E-11116156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGRLSCGGGG VQPKLRKGLW SPEEDEKLYN HIIRHGVGCW SSVPKLAGKQ HELTHFTAVS  60
ISLSSPSSLY TAIHGAPCLN CLLARCGAVR AGLQRCGKSC RLRWINYLRP DLKRGSFSQQ  120
EEDLIVALHE ILGNRWSQIA SHLPGRTDNE IKNFWNSCLK KKLRQRGIDP ATHKPISVGA  180
DAEAGAAVPD ARDHDRKPGG ADTDADADGL AQSKQQQTPP AVFDPFPVTN FGFDLGVAAL  240
YAGPYDDSVV GKASPDAGFL ADYSSVLDVS ENLGYGESSS NSSNWNCAEM SNAVLDSEVL  300
HWASGGAAAN PEPYTELEQQ QHSGRYGNGG GQGVDHNPNA LDHQFLAGPC GKSXALAHFR  360
LPPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22131633108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164LKKKLRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.103300.0crown| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440172.11e-161myb-related protein Hv33
SwissprotP200276e-98MYB3_HORVU; Myb-related protein Hv33
TrEMBLC5YUX11e-160C5YUX1_SORBI; Uncharacterized protein
STRINGPavir.Ca01788.1.p1e-163(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-66myb domain protein 86