PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof001861

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C2H2

Protein Properties

Length: 356aa MW: 37457.1 Da PI: 8.9013

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-388133732	PU_ref	plantGDB	View CDS
PUT-157a-Saccharum_officinarum-47779	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	181	204	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ r+ +L+ H+ + H Sof001861 181 FPCKVCGEVLGRPQLLELHQAMkH 204 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	183	204	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.90.228.10	2.5E-4	207	308	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
XHASCCFSPG PAARAREEDE ATDADGDGKV GGGGGSSKRR KISPLIFSPA ASSSAVTSVS 60 VRGAPRRHVS SLATSLRFYI HRIFSSSGSG AKNGGTVAGS REEEEAVATT VSSPLAQSLP 120 HQPSTSVVLS TPSSPCASSP FMSPLSVRSL SATPVPSSSP QKLLQASRQS SRSFAARGDV 180 FPCKVCGEVL GRPQLLELHQ AMKHSLSELT HLDSSLNIIR MIFLAGWKPA AASGAGAGEA 240 PAVRRILRIH HNPRALARFE EYRDLVRARA ARRCGEGAVL EERCIADGNE RLRFHCSTML 300 CSLCGGGVCR SPYCCVCSTL RHGLAGKQAD VDGIATYAFA WAGHASLPGD VEREFP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

XHASCCFSPG PAARAREEDE ATDADGDGKV GGGGGSSKRR KISPLIFSPA ASSSAVTSVS  60
VRGAPRRHVS SLATSLRFYI HRIFSSSGSG AKNGGTVAGS REEEEAVATT VSSPLAQSLP  120
HQPSTSVVLS TPSSPCASSP FMSPLSVRSL SATPVPSSSP QKLLQASRQS SRSFAARGDV  180
FPCKVCGEVL GRPQLLELHQ AMKHSLSELT HLDSSLNIIR MIFLAGWKPA AASGAGAGEA  240
PAVRRILRIH HNPRALARFE EYRDLVRARA ARRCGEGAVL EERCIADGNE RLRFHCSTML  300
CSLCGGGVCR SPYCCVCSTL RHGLAGKQAD VDGIATYAFA WAGHASLPGD VEREFP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16907	0.0	crown\| inflorescence\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021313429.1	0.0	uncharacterized protein LOC8054291
TrEMBL	C5WQ57	0.0	C5WQ57_SORBI; Uncharacterized protein
STRING	Sb01g040170.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	4e-35	C2H2 family protein