PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof001897

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 352aa MW: 38858 Da PI: 7.0434

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17452301	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-866133734	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28	4.8e-09	179	214	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 +k +r ++NReA r+sR+RKka+i++Le+ +L Sof001897 179 DKIQRLFAQNREAVRKSRLRKKAYIQNLETSRMKLA 214 6788999*********************98444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-6	178	222	No hit	No description
SuperFamily	SSF57959	2.11E-5	180	222	No hit	No description
Pfam	PF07716	1.3E-4	187	225	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.2E-29	266	340	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
XRAQIHIWPA ALSYYYFLLD GGIFLTLPAA HPYKKVDQVK HEMELYTGYL QDHFNIHKLS 60 RLQPLATSGA PGRYVTSGPV GGGTAMGIYK RQRHLVAAGV WGEPFRPDAD AVALPLPAVV 120 PTVTLAPPAL DVVVEAEEVK FGKRLLQAQQ DDGPPAVEEE APPPSSDSFG YDDDARPGDK 180 IQRLFAQNRE AVRKSRLRKK AYIQNLETSR MKLAQLEQEL TMARRQQQGA YGVGGGGVTP 240 AAPVDPRVAA FELEYAHWVE EQDRQATELR AALQSHAPDV QLRVLVDAGL AHYGALFQAK 300 ARAARSDAFF VLSGVWRAPA ERFFLWIGGF RPSELLKVLA PQLDPFLELQ AD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

XRAQIHIWPA ALSYYYFLLD GGIFLTLPAA HPYKKVDQVK HEMELYTGYL QDHFNIHKLS  60
RLQPLATSGA PGRYVTSGPV GGGTAMGIYK RQRHLVAAGV WGEPFRPDAD AVALPLPAVV  120
PTVTLAPPAL DVVVEAEEVK FGKRLLQAQQ DDGPPAVEEE APPPSSDSFG YDDDARPGDK  180
IQRLFAQNRE AVRKSRLRKK AYIQNLETSR MKLAQLEQEL TMARRQQQGA YGVGGGGVTP  240
AAPVDPRVAA FELEYAHWVE EQDRQATELR AALQSHAPDV QLRVLVDAGL AHYGALFQAK  300
ARAARSDAFF VLSGVWRAPA ERFFLWIGGF RPSELLKVLA PQLDPFLELQ AD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16409	0.0	root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320829.1	1e-176	transcription factor TGAL6 isoform X1
Refseq	XP_021320830.1	1e-176	transcription factor TGAL6 isoform X1
Swissprot	Q6ZBS8	4e-78	TGL10_ORYSJ; Transcription factor TGAL10
TrEMBL	A0A1Z5R886	1e-175	A0A1Z5R886_SORBI; Uncharacterized protein
STRING	Sb07g004900.1	1e-133	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.6	4e-61	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]