PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof001944

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 346aa MW: 36844.1 Da PI: 8.5042

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17250678	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-102188	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	144.4	1.2e-44	110	340	2	240
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + L ++A+a ++g+ a+++Larl+++ p g+p+ R a+y++eAL la+ + + ts+ +++ +laa+k+fs+ sP+l+f+++ta qa Sof001944 110 LDELAAAAKAAEAGNSIGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GHHGGCHLTSPLDVALKLAAYKTFSDHSPVLQFTNFTATQA 204 57899***********************************************.....666677788888899********************** PP GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 +l+++ g+ +++H+iDfd++ G+QW+++lq+La R+ + p +++T+ +s++s++ el+ ++++a+fA+ lg+pfef+++ + ++++ eL Sof001944 205 LLDEIVGStsSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAYVSAASHHPLELRLARDNIAQFAADLGIPFEFSAI---SADMINRAELI 301 *9988899********************977555589**************************************8...56667666664 PP GRAS 196 vkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 + +E +a l +l + +L+lvk+l +k v+ Sof001944 302 SASgDEFVAGVLPAGCSARA---PTL----PVILRLVKQLASKNVI 340 44437777755544333332...333....3488888888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	29.21	83	346	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-42	110	340	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
XRKPPLLGAQ PPGLHQYQHQ PTPATTFFMP IPSFPDHNQL SPLVQPPPKR HQSIGDDLYL 60 ARNRLLPLAA GQGPFPPLNG PAPFQLQPSP PPPHGAMKTT AAEAAQQQLL DELAAAAKAA 120 EAGNSIGARE ILARLNHQLP PLGKPFLRSA SYLKEALLLA LAEGHHGGCH LTSPLDVALK 180 LAAYKTFSDH SPVLQFTNFT ATQALLDEIV GSTSSCIHVI DFDLGVGGQW ASFLQELAHR 240 RGAGGAALPF VKLTAYVSAA SHHPLELRLA RDNIAQFAAD LGIPFEFSAI SADMINRAEL 300 ISASGDEFVA GVLPAGCSAR APTLPVILRL VKQLASKNVI AIKPWR

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

XRKPPLLGAQ PPGLHQYQHQ PTPATTFFMP IPSFPDHNQL SPLVQPPPKR HQSIGDDLYL  60
ARNRLLPLAA GQGPFPPLNG PAPFQLQPSP PPPHGAMKTT AAEAAQQQLL DELAAAAKAA  120
EAGNSIGARE ILARLNHQLP PLGKPFLRSA SYLKEALLLA LAEGHHGGCH LTSPLDVALK  180
LAAYKTFSDH SPVLQFTNFT ATQALLDEIV GSTSSCIHVI DFDLGVGGQW ASFLQELAHR  240
RGAGGAALPF VKLTAYVSAA SHHPLELRLA RDNIAQFAAD LGIPFEFSAI SADMINRAEL  300
ISASGDEFVA GVLPAGCSAR APTLPVILRL VKQLASKNVI AIKPWR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.15714	0.0	bud\| seed

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452792.1	0.0	scarecrow-like protein 27
TrEMBL	C5Y1F5	0.0	C5Y1F5_SORBI; Uncharacterized protein
STRING	Sb04g032570.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	3e-35	GRAS family protein