PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001949
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 346aa    MW: 37429.6 Da    PI: 8.863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17280747PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-147133727PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.71e-22276321246
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTT CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpk 46 
                 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a++p+
  Sof001949 276 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAnGCPVRKQVQRCADEPS 321
                7***************************999***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.071270320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-21272321IPR003657WRKY domain
SuperFamilySSF1182902.75E-19274321IPR003657WRKY domain
SMARTSM007741.0E-21275326IPR003657WRKY domain
PfamPF031064.3E-20277320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAADDGNGT PPARGRRSIE VDFFSDDKDK KTAAANNKTC RTVSPEPAPP AGSGSGSAAS  60
CLAIKKEDLT INLLPGTGSN ANDDEAATRL RLLDQDKQSR NTNELSAMQA ELARMNDENQ  120
RLRGMLTQVT SSYQALQMHL VSLMQARPGG PAQLMPPPVA QATDGAAVLP LPRQFLGLGP  180
AEETSNSSTE VGSPRRSSST GGNRRQDQQA ERGDSPDPST RQQQQEASMR KARVSVRARS  240
EAPIVSRLSE FSFFVMWFPD IHCNAMDTDG CTTQIADGCQ WRKYGQKMAK GNPCPRAYYR  300
CTMANGCPVR KQVQRCADEP SSSSQPKRAP KNTRCRPAAM AMGSNX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156540.0bud| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457035.11e-151WRKY transcription factor 6 isoform X1
TrEMBLC5XJG71e-150C5XJG7_SORBI; Uncharacterized protein
STRINGSb03g000240.11e-151(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-56WRKY family protein