PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001959
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-YA
Protein Properties Length: 345aa    MW: 36534.3 Da    PI: 9.9959
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17275441PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-18990PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.6e-32248304158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  Sof001959 248 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 304
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-36246307IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.498247307IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-28249304IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.5E-25250272IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860252272IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.5E-25281304IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
XHGDDLCAER APIGRPPGIL LPAPHLRNAR ARERGDRERK QGKXDDALAY WPPAPLLRTQ  60
CDGRGLSVAA GRAASVSSME SRPGGTNLVE PRGQGAALPS GGGPAVQPWW TSSGAVLGAV  120
SPAVVAPGSG TGISLSSSPA GGSGGGGAAK GAPSDESSED SRRSGEPKDG SAGQEKNHAT  180
SQIPALVPEY LAPYSQLELN QSIASAAYQY PDPYYAGMVA PYGSQAVAHF QLPGLTQSRM  240
PLPLEVSEEP VYVNAKQYHG ILRRRQSRAK AELEKKVVKA RKPYLHESRH QHAMRRARGN  300
GGRFLNTKKS DNGTPNGKAE PKKGDENSER LHVPPDLLQL RQNEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21248312266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61170.0bud| inflorescence| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304143.11e-164nuclear transcription factor Y subunit A-1-like
RefseqXP_021304146.11e-164nuclear transcription factor Y subunit A-1-like
TrEMBLA0A1B6QIQ61e-163A0A1B6QIQ6_SORBI; Uncharacterized protein
STRINGSb01g011220.21e-163(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-32nuclear factor Y, subunit A7